GenBank_CP003831_Region_377755_378976
1
TEF1
Organism: Cryptococcus neoformans var. grubi H99
2022-06-22T19:51:51
Plasmid <a href="https://www.addgene.org/128354/"> pSDMA65 (#128354)</a>
Genbank: <a href="https://www.ncbi.nlm.nih.gov/nucleotide/CP003831.1?report=genbank&log$=nuclalign&blast_rank=4&RID=VA2YHKPC013&from=377755&to=378976">CP003831 Region: 377755..378976</a>
This is the promoter of the Elongation Factor 1.
The plasmid TEF1 sequence (#128354) has an SNP in position 168 compared to the genomic sequence (CP003831). We used the genomic sequence.
27711143
GenBank_CP003831_Region_377755_378976Sequence
1
cattctatgctatacggtacaagattgtggctactatgcaagctccatagcgaatgatcttacactgaccttgtcgaccgttctgaatgattaacaatggtcgcaagtgtggttgacccacctgcgggcgcttcttaactatctatcatcggtatgtcaagtatcactccctttaaacaaaagaataagagcataatacagcagtctcatcatggcaacccttcgcgcaatgtacaaaaagcagccagaagcccccacgcacaagcaataatgtcgtgttctaccctgccatgaacaagcgtcatggccattagcgaacgccccaatattcagccccattcgccaagcaagttgcctcgcccccttcccagaagatcatgggcatctcgtcttcttctaatttcgcattttgtgaagctccattcatgcacgtcggcttctggacgactcttatcatatgcattggcctgctcggtgtgaggatgagccactcccacatgtttagacggcaggggcctcttgccacccgttgaatttttggtgcgaagacgtgcctgggaacgacctccactttaaatttctccgttgttgcggtcgctccatcctcctcacatttcttgcctcctaagtcccatgtgccacactcggtgaaaaacggagtttgatacggatgaaatttccagtgagcttttcacattctggaggtttcgaaaaaaattgtgggattttctgaattaatccgagaatccgccctgcccatcaaccggaaagaattaaatccctcgcacattcctttctcccaccaccttctttatctctacattctttaaccaaaacacctaggtgagtacccaaagtcttttgacacctttgaaaatccgcgccagtcgtagggcacgtaaaacaattctcgctggtggcttctgcaggtgaagtcggggcagagtggagctgagcatggtcgaccacccacatcattctgtcttgtttttggcgatgtcttccatgcttttgccctcatctgttgcgtcgactgcagagtactgttttgccactactgagctcaacatgggcttgtgtgtggtgaagaaaaaaatttggtggctcttgaaaattttcaacccatcggatacatgcccttccaactcacaacgccctaacactttattgtcctatcattgcctcttcgcacatgctaacgatctccacagaaaacttcaaa
GenBank_CP003831_Region_377755_378976_SBOLDesignerActivity
1
Sophia Garcia de Resende
2021-12-11T21:41:41.306Z
Association
1
SBOLDesigner
3.1
SBOLDesigner CAD Tool
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Samuel Bridge
Chris Myers
Michal Galdzicki
Michael Zhang
John Gennari
Sean Sleight
Bryan Bartley
Evren Sirin