BBa_B0030
1
BBa_B0030
RBS.1 (strong) -- modified from R. Weiss
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
Strong RBS based on Ron Weiss thesis. Strength is considered relative to <bb_part>BBa_B0031</bb_part>, <bb_part>BBa_B0032</bb_part>, <bb_part>BBa_B0033</bb_part>.
false
true
_44_46_
0
24
7
In stock
false
Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix ("orig" in figure 4-14 of Ron Weiss thesis). <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS.
Contact info <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a>
true
Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003.
annotation1702
1
RBS
range1702
1
8
12
annotation1701
1
RBS-1\Strong
range1701
1
1
15
annotation7025
1
BBa_B0030
range7025
1
1
15
BBa_I711013
1
BBa_I711013
Cellulase from Saccharophagus degradans 2-40
2007-07-11T11:00:00Z
2015-08-31T04:07:45Z
Saccharophagus degradans 2-40
This sequence codes for a cellulase which is reponsible for breaking down cellulose into glucose.
true
false
_158_
0
1498
9
Discontinued
false
None
false
Ranjan Khan
BBa_J23119
1
BBa_J23119
constitutive promoter family member
2006-08-23T11:00:00Z
2015-08-31T04:08:40Z
Overlap extension of synthetic oligonucleotides
Released HQ 2013
Later
false
true
_52_
0
483
95
In stock
false
N/A
true
John Anderson
BBa_I711020
1
BBa_I711020
Cellulase Generator
2007-07-15T11:00:00Z
2015-08-31T04:07:45Z
Saccharophagus degradans 2-40
This part constitutively translates the cel5F gene from Saccharophagus degradans 2-40. The cellulase produced help degrade cellulose into glucose.
true
false
_158_
0
1498
9
Discontinued
false
None
false
Ranjan Khan
component1938385
1
BBa_B0030
component1938388
1
BBa_B0012
component1938383
1
BBa_J23119
component1938392
1
BBa_B0011
component1938387
1
BBa_I711013
annotation1938392
1
BBa_B0011
range1938392
1
1222
1267
annotation1938388
1
BBa_B0012
range1938388
1
1173
1213
annotation1938387
1
BBa_I711013
range1938387
1
67
1164
annotation1938385
1
BBa_B0030
range1938385
1
44
58
annotation1938383
1
BBa_J23119
range1938383
1
1
35
BBa_B0011
1
BBa_B0011
LuxICDABEG (+/-)
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Derived from luxICDABEG operon terminator of Vibrio fischeri <genbank>AF170104</genbank>.
Released HQ 2013
Bidirectional transcriptional terminator consisting of a 22 bp stem-loop.</p>
false
false
_1_
0
24
7
In stock
false
<P> <P>In the naturally-occuring sequence there is a mismatch in the stem of the stem loop. This can be corrected via an A->G mutation (at position 40 -- sequence coordinate/not MFOLD coordinate). The above sequence does not reflect this mutation (but the MFOLD image does). This terminator's location cannot be found using some inverted repeat detectors like PALINDROME because it is too short and contains a mismatch. This one was found with the help of Tom Knight. It lies between two coding regions that point towards eachother.<P>
true
Reshma Shetty
annotation1683
1
stem_loop
range1683
1
13
35
annotation7019
1
BBa_B0011
range7019
1
1
46
BBa_B0012
1
BBa_B0012
TE from coliphageT7
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>.
Released HQ 2013
Transcription terminator for the <i>E.coli</i> RNA polymerase.
false
false
_1_
0
24
7
In stock
false
<P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator.
false
Reshma Shetty
annotation1690
1
polya
range1690
1
28
41
annotation7020
1
BBa_B0012
range7020
1
1
41
annotation1686
1
T7 TE
range1686
1
8
27
annotation1687
1
stop
range1687
1
34
34
BBa_I711013_sequence
1
atgctggcctctaacaaaaactctaaactggctaattctgaacagcaccgtccgtacaaaactcgtaccgctcgctggctgaccggttctggtgtaatcgcgtcttccctgctgttctctgctcagagcttcgcagcgcagtgcgaatatatcatctctaatgagtggaactctggttttaccggtgctgtacgcatcactaacaacggtaccaccccgatcaacggctgggatgtttcttggcagtacgcaggcgacgcggtaactagctcctggaacgccaacgtttctggtagcaatccagtatccgcaaccccgctgtcttggaacgcgaacatccagccgggccaatccgttgagttcggctttcagggcagcaaagccggctctaatgcggaaatcccgactgtgaccggtgccgtttgtgacagcggctcttcttcctcctcctccagctctagcagctcctctagcagcagctcttcttcctcttcttctactagctcttctagcagctcttccagctccacgtcttcttctagctcttcctctggttctagcggcaccggcggcattgcgtgtacggttggcaacgcaaacatctggggctccggctaccagctggatatgcaggtggttaacaacggtactgcagctgtaagctcttgggatgtgaccatggccttcggtgaagctccgcagcgtacgggcggctggaacgctaacttcgtggaaagcggtaacacgatcgttgctagcaacatctcctggaacggtaacctggctccgggtcagtccgcatcctttggtatccagggcaaccacgacggctctttcggcggcgtgacctgcaacggcgcaagctccagcggttcctccagctccggctcctctacttcttcctctagctctagctcttcttcttccggttctagcaccagcagctcctcctcttccagctctaccggctccacttccagctcttcctcctcttctacctcctccaccagctccagctcttctagctccaccagcagcacctcttctagctcctcctcctcttctagcacttccagcagctccagcagctctagctcctcttcttctagcagcaccagcggcagcggtgcgggttttgacaacccattcattggtggtaagtggtacgtggatccggtatggtctgcaaaagcagccgcagaaccgaacggcagcctgatcgcgaactacaacaccgccgtttggatggatcgtatcggtgcgatcgagggtcctgaagacggcgacggcatgggtctggaagaacacctggacgaagcgctggcacaaggcgccgacatctttatgttcgtggtgtacgacctgccaaaccgtgattgcgccgctctggcttcctctggtgaactgctgatcgctgaaaacggcttcgaacgttatcagaacgagtacatcggtccgattgtagacattctgtctaaaccagcctactcctccctgcgtatcatcgctatcatcgaagtcgactctctgccaaacctggttacgaacctgaacattcagaagtgtgtagaggcgaacggtccaggcggctatgttgacggcatccaacacgcgctgaacgaactgaacaccctggataacgtgtacccgtacgtcgacatcgctcattctggttggctgggttggagcgacaacttcgccggtgctaccaaactgatcggtgatgcaatcaagggtaccaacaaaggtgttaattccatcgcgggcttcgtctccaacagcagcaactacactccggttacggaaccgtacctgccgaacccgactctgcagatcggtagcaatcaggtacgtagcgccgatttttatgaatggaccatgtatttcgaagagctgtcttttgtgcaggactggcgtcaggctatgatccaacagggcttcccggaatccattggcatgctgatcgatacggcacgcaacggctggggtggccctgaccgtccaacgggcgaatctactagcaccgatctgaacacctatgtcaatgagtctcgcatcgatcgtcgtcagcaccgcggcaactggtgtaatcagccgggtggtgttggcttccgcccgcaagcggcgccagagccgggcgtagacgcgtatgtgtgggtaaaaccgcagggtgaatctgatggcatctctgacccaaacttcccaattgatccgaacgatccagccaaacagcatgatccgatgtgcgatccgaacgctcctaaccgtgacaacaacgctgtcggtaccggcgcactggacaatgcgccgcatgcgggtcgttggtttcctgaagccttccagatcctgatcgaaaacgcgtacccgcctctg
BBa_B0030_sequence
1
attaaagaggagaaa
BBa_I711020_sequence
1
ttgacagctagctcagtcctaggtataatgctagctactagagattaaagaggagaaatactagagttagcgttttttagcttctagcataacctgtttaaaaaacgcgccttgctcgctgggggtaaaatcccagtcgttaatcattgttgggctccagtcggggtcgaatacccataccgtgtaagaaacgccttttttctgcatatacttcactatgcgggggccgtaactgccgtcgtctttaacgggtatgtgggcaccataaccatcgggttgtacccagcctagctctgttgctattacagggtaggtgtctgcagcaaagccccacttttcgtcccacagtttgaagaagtttttatcgttcttaacctctggtttcgccttttgcgggtaggggtgtgcggcgtaagcaatgccttcacgctcgataggtgcctttttgattggcgataaatcataggcccagttgaagcctgcaaccagcggaatgacggttttgtcactggcatatatcatatcaattaggctttcatttaaggttttccactcggcccagttgcgttcgcctagggtgttacccatggtggttggctcattaaataattcgtataccgctacggtgggcacgtttttgtagcggaacgtaattctgcgccaaaagtcgcgggtttctttaatggtggtgtcgtacatggggtgttggtattgctcggtgggcaaatagccaatggagtgccaatcaagaataaggtaaatacctaaatcattcgcccagcgtaccgcctcatcgatgtggcctaaataaacgtctggcccaagtttacgccaacttacagggtgaataggcaggcgaatagtatttaccccccagttattagccagctcttcaaacagcgatttttgccattgattttggctaagtagcttacctgtatcggcaatgtttacccctctaaaagtgaaggttttgcccttatcatcaatgaacttgttaccttttaccgatataaaactttgcgttttaaggctttttacatcgaattggctcgggtagggtatatcccaccagtcgtttgatggggcgctgttatttgcactcagtgcactggctgaggccagcaagcagagtgcaagcgcaagaaatttggttgtgcgcattactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagagagaatataaaaagccagattattaatccggcttttttattattt
BBa_B0011_sequence
1
agagaatataaaaagccagattattaatccggcttttttattattt
BBa_B0012_sequence
1
tcacactggctcaccttcgggtgggcctttctgcgtttata
BBa_J23119_sequence
1
ttgacagctagctcagtcctaggtataatgctagc
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
James Alastair McLaughlin
Chris J. Myers
2017-03-06T15:00:00.000Z