BBa_J05215 1 BBa_J05215 Regulator for R1-CREBH 2005-09-07T11:00:00Z 2015-08-31T04:08:15Z binding sites for R3-ATF6 and R2-YAP7 false false _34_ 0 412 34 Not in stock false false Alexander Roth BBa_B0030 1 BBa_B0030 RBS.1 (strong) -- modified from R. Weiss 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 Strong RBS based on Ron Weiss thesis. Strength is considered relative to <bb_part>BBa_B0031</bb_part>, <bb_part>BBa_B0032</bb_part>, <bb_part>BBa_B0033</bb_part>. false true _44_46_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix (&quot;orig&quot; in figure 4-14 of Ron Weiss thesis). <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation1702 1 RBS range1702 1 8 12 annotation1701 1 RBS-1\Strong range1701 1 1 15 annotation7025 1 BBa_B0030 range7025 1 1 15 BBa_B0010 1 BBa_B0010 T1 from E. coli rrnB 2003-11-19T12:00:00Z 2015-08-31T04:07:20Z Transcriptional terminator consisting of a 64 bp stem-loop. false false _1_ 0 24 7 In stock false true Randy Rettberg annotation4184 1 stem_loop range4184 1 12 55 annotation7018 1 BBa_B0010 range7018 1 1 80 BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_J05110 1 R2 Repressor R2-YAP7 2005-09-03T11:00:00Z 2015-08-31T04:08:15Z R2-YAP7 (GGA GGC GGG) => (CCC GCC TCC GGA GGC GGG) false false _34_ 0 412 34 Not in stock false false Alexander Roth annotation1730099 1 ZF-GGG range1730099 1 55 78 annotation1730101 1 ZF-GGC range1730101 1 139 162 annotation1730098 1 Finger 1 range1730098 1 22 105 annotation2214043 1 Help:Barcodes range2214043 1 442 466 annotation1730103 1 ZF-GGA range1730103 1 223 246 annotation1730102 1 Finger 3 range1730102 1 190 273 annotation1730100 1 Finger 2 range1730100 1 106 189 BBa_J05218 1 BBa_J05218 Regulator for R4-cMaf 2005-09-07T11:00:00Z 2015-08-31T04:08:15Z binding sites for R1-CREBH and R2-YAP7 false false _34_ 0 412 34 Not in stock false false Alexander Roth BBa_I12007 1 Prm + Modified lambda Prm promoter (OR-3 obliterated) 2004-07-14T11:00:00Z 2015-08-31T04:07:31Z Shih and Gussin (1983) Released HQ 2013 Lambda Prm promoter modified to be activated but not repressed by the lambda repressor (cI) false true _3_ 0 103 7 In stock false In wild type lambda phage, the OR3 site (-27 to -11) reads "tatcccttgcggtgata" on the sense strand of DNA. To prevent lambda repressor (cI) from binding to this site, the 4th through 10th nt of OR3 were replaced by the 7 nt between OR2 and OR1, "aaatagt" (-57 to -51), which in effect mutates 5 nt of the promoter. These nt were chosen to be about halfway between the -10 and -35 boxes of the promoter. Furthermore, since these nt already act as a spacer in wild-type phage, it is hoped they will not create undesired interactions. true Hans annotation937704 1 mutate to obliterate OR3 range937704 1 59 65 annotation937702 1 OR2 range937702 1 33 49 annotation937703 1 -35 range937703 1 48 53 annotation937705 1 -10 range937705 1 71 76 annotation937701 1 OR1 range937701 1 9 25 BBa_J05217 1 BBa_J05217 Regulator for R2-YAP7 2005-09-07T11:00:00Z 2015-08-31T04:08:15Z binding sites for R3-ATF6 and R4-cMaf false false _34_ 0 412 34 Not in stock false false Alexander Roth BBa_B0012 1 BBa_B0012 TE from coliphageT7 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>. Released HQ 2013 Transcription terminator for the <i>E.coli</i> RNA polymerase. false false _1_ 0 24 7 In stock false <P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator. false Reshma Shetty annotation1686 1 T7 TE range1686 1 8 27 annotation1687 1 stop range1687 1 34 34 annotation1690 1 polya range1690 1 28 41 annotation7020 1 BBa_B0012 range7020 1 1 41 BBa_J05040 1 4-SD 4-State Device 2005-09-20T11:00:00Z 2015-08-31T04:08:15Z The <a href="http://parts2.mit.edu/wiki/index.php/4-State_Device">4-State Device</a> is a toggle switch that sequenctially progresses throuh 4 states with alternating inputs from Pr and Prm. It can be used to function in a counter. The interface promotors from the EPD are included. false false _34_ 0 412 34 Not in stock false false NOR group component1706773 1 BBa_B0034 component1706851 1 BBa_B0012 component1706836 1 BBa_E0040 component1706841 1 BBa_B0010 component1706768 1 BBa_J05217 component1706738 1 BBa_B0010 component1706880 1 BBa_J05111 component1706886 1 BBa_B0010 component1706815 1 BBa_J05217 component1706723 1 BBa_J05215 component1706732 1 BBa_J05108 component1706876 1 BBa_B0034 component1706728 1 BBa_B0034 component1706777 1 BBa_J05110 component1706871 1 BBa_J05218 component1706866 1 BBa_R0051 component1706783 1 BBa_B0010 component1706813 1 BBa_I12007 component1706833 1 BBa_B0030 component1706748 1 BBa_B0012 component1706763 1 BBa_R0051 component1706793 1 BBa_B0012 component1706896 1 BBa_B0012 component1706721 1 BBa_I12007 component1706820 1 BBa_B0034 component1706824 1 BBa_J05110 annotation1706721 1 BBa_I12007 range1706721 1 1 82 annotation1706871 1 BBa_J05218 range1706871 1 3072 3112 annotation1706748 1 BBa_B0012 range1706748 1 714 754 annotation1706783 1 BBa_B0010 range1706783 1 1361 1440 annotation1706732 1 BBa_J05108 range1706732 1 158 592 annotation1706773 1 BBa_B0034 range1706773 1 869 880 annotation1706777 1 BBa_J05110 range1706777 1 887 1327 annotation1706763 1 BBa_R0051 range1706763 1 763 811 annotation1706824 1 BBa_J05110 range1706824 1 1655 2095 annotation1706738 1 BBa_B0010 range1706738 1 626 705 annotation1706836 1 BBa_E0040 range1706836 1 2150 2869 annotation1706813 1 BBa_I12007 range1706813 1 1498 1579 annotation1706793 1 BBa_B0012 range1706793 1 1449 1489 annotation1706723 1 BBa_J05215 range1706723 1 91 131 annotation1706876 1 BBa_B0034 range1706876 1 3121 3132 annotation1706833 1 BBa_B0030 range1706833 1 2129 2143 annotation1706815 1 BBa_J05217 range1706815 1 1588 1628 annotation1706886 1 BBa_B0010 range1706886 1 3604 3683 annotation1706896 1 BBa_B0012 range1706896 1 3692 3732 annotation1706866 1 BBa_R0051 range1706866 1 3015 3063 annotation1706851 1 BBa_B0012 range1706851 1 2966 3006 annotation1706880 1 BBa_J05111 range1706880 1 3139 3570 annotation1706841 1 BBa_B0010 range1706841 1 2878 2957 annotation1706820 1 BBa_B0034 range1706820 1 1637 1648 annotation1706768 1 BBa_J05217 range1706768 1 820 860 annotation1706728 1 BBa_B0034 range1706728 1 140 151 BBa_J05111 1 R4 Repressor R4-cMaf 2005-09-03T11:00:00Z 2015-08-31T04:08:15Z R4-cMaf (GGG GCC GGA) => (TCC GGC CCC GGG GCC GGA) false false _34_ 0 412 34 Not in stock false false Alexander Roth annotation1730117 1 Finger 3 range1730117 1 190 273 annotation1730115 1 Finger 2 range1730115 1 106 189 annotation1730118 1 ZF-GGG range1730118 1 223 246 annotation1730116 1 ZF-GCC range1730116 1 139 162 annotation1730113 1 Finger 1 range1730113 1 22 105 annotation1730114 1 ZF-GGA range1730114 1 55 78 annotation2214044 1 Help:Barcodes range2214044 1 433 457 BBa_R0051 1 cI lam promoter (lambda cI regulated) 2003-01-31T12:00:00Z 2015-05-08T01:14:14Z <a href="http://www.nature.com/cgi-taf/DynaPage.taf?file=/nature/journal/v403/n6767/abs/403335a0_fs.html&dynoptions=doi1043774228">A synthetic oscillatory network of transcriptional regulators</a> , Elowitz M.B. , Leibler S., Nature(403),335-38: 2000 Released HQ 2013 The cI regulated promoter is based on the pR promtoer from bacteriohage lambda. The promoter has two two DNA binding sites for lambda cI repressor <bb_part>BBa_C0051</bb_part>. cI binding results in repression of transcription. The specific sequence used here is based on the cI repressible promoter used in the Elowitz repressilator (and references therein).</P> false true _1_ 0 24 7 In stock false <P> <P>In order to address concerns about the promoter transcribing in the reverse direction, we have removed the -35 and -10 signals responsible for the promoter activity in the reverse direction. (<b><font color="red">More details needed here! DE, 2/24/03</font></b>)<P> Incompatible with host expressing cI repressor. true Vinay S Mahajan, Brian Chow, Peter Carr, Voichita Marinescu and Alexander D. Wissner-Gross annotation7067 1 BBa_R0051 range7067 1 1 49 annotation2025 1 OR2 range2025 1 1 17 annotation2023 1 -35 range2023 1 15 20 annotation2022 1 -10 range2022 1 38 43 annotation2024 1 OR1 range2024 1 25 41 BBa_E0040 1 GFP green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212 2004-09-29T11:00:00Z 2016-01-26T02:09:38Z Released HQ 2013 GFP (mut3b) [note that this part does not have a barcode] false true _11_1_ 4206 61 7 In stock false true jcbraff annotation1934520 1 GFP protein range1934520 1 1 720 BBa_J05108 1 R1 Repressor R1-CREBH 2005-09-03T11:00:00Z 2015-08-31T04:08:15Z HR1-CREBH (GGA GGG GAC) => (GTC CCC TCC GGA GGG GAC) false false _34_ 0 412 34 Not in stock false false Alexander Roth annotation1730070 1 Finger 2 range1730070 1 106 189 annotation1730073 1 ZF-GGA range1730073 1 223 246 annotation1730072 1 Finger 3 range1730072 1 190 273 annotation2214041 1 Help:Barcodes range2214041 1 436 460 annotation1730069 1 ZF-GAC range1730069 1 55 78 annotation1730071 1 ZF-GGG range1730071 1 139 162 annotation1730068 1 Finger 1 range1730068 1 22 105 BBa_J05217_sequence 1 cctcgcccccgggggcgagggctccggccccggggccggag BBa_J05111_sequence 1 atgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgattgccgcgatctggcgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcaaaaaaaccagccagcagcgccatgtgctggaaagcgaaaaaaaccagctgctgcaacaggtggatcatctgaaacaggaaattagccgcctggtgcgcgaacgcgatgcgtataaagaaaaatatgaaaaactggtgagcagcggctttcgcgaaaactaataacactgatagtgctagtgtagatcac BBa_I12007_sequence 1 gcaaccattatcaccgccagaggtaaaatagtcaacacgcacggtgttagatatttataaatagtggtgatagatttaacgt BBa_B0034_sequence 1 aaagaggagaaa BBa_R0051_sequence 1 taacaccgtgcgtgttgactattttacctctggcggtgataatggttgc BBa_J05040_sequence 1 gcaaccattatcaccgccagaggtaaaatagtcaacacgcacggtgttagatatttataaatagtggtgatagatttaacgttactagagcctcgcccccgggggcgagggccccgcctccggaggcggggtactagagaaagaggagaaatactagatgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgatccgggcaacctggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcaaaaaaaccagcgaatatattgatggcctggaaacccgcatgagcgcgtgcaccgcgcagaaccaggaactgcaacgcaaagtgctgcatctggaaaaacagaacctgagcctgctggaacagctgaaaaaactgcaagcgattgtggtgcagagcaccagctaataacgctgatagtgctagtgtagatcgctactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtaacaccgtgcgtgttgactattttacctctggcggtgataatggttgctactagagcctcgcccccgggggcgagggctccggccccggggccggagtactagagaaagaggagaaatactagatgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgatccgggccatctggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcaaaaaaaccagcacccgcattcaggtgctggaagaaaaagtggaaatgctgcataacctggtggatgattggcagcgcaaatataaactgctggaaagcgaatttagcgataccaaagaaaacctgcaaaaaagcattgcgctgaacaacgaactgcaaaaagcgctgtaataactctgatagtgctagtgtagatctctactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagaggcaaccattatcaccgccagaggtaaaatagtcaacacgcacggtgttagatatttataaatagtggtgatagatttaacgttactagagcctcgcccccgggggcgagggctccggccccggggccggagtactagagaaagaggagaaatactagatgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgatccgggccatctggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcaaaaaaaccagcacccgcattcaggtgctggaagaaaaagtggaaatgctgcataacctggtggatgattggcagcgcaaatataaactgctggaaagcgaatttagcgataccaaagaaaacctgcaaaaaagcattgcgctgaacaacgaactgcaaaaagcgctgtaataactctgatagtgctagtgtagatctctactagagattaaagaggagaaatactagatgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagtaacaccgtgcgtgttgactattttacctctggcggtgataatggttgctactagagcgtcccctccggaggggacggccccgcctccggaggcggggtactagagaaagaggagaaatactagatgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgattgccgcgatctggcgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcaaaaaaaccagccagcagcgccatgtgctggaaagcgaaaaaaaccagctgctgcaacaggtggatcatctgaaacaggaaattagccgcctggtgcgcgaacgcgatgcgtataaagaaaaatatgaaaaactggtgagcagcggctttcgcgaaaactaataacactgatagtgctagtgtagatcactactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata BBa_B0010_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc BBa_B0030_sequence 1 attaaagaggagaaa BBa_J05108_sequence 1 atgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgatccgggcaacctggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcaaaaaaaccagcgaatatattgatggcctggaaacccgcatgagcgcgtgcaccgcgcagaaccaggaactgcaacgcaaagtgctgcatctggaaaaacagaacctgagcctgctggaacagctgaaaaaactgcaagcgattgtggtgcagagcaccagctaataacgctgatagtgctagtgtagatcgc BBa_E0040_sequence 1 atgcgtaaaggagaagaacttttcactggagttgtcccaattcttgttgaattagatggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgcaacatacggaaaacttacccttaaatttatttgcactactggaaaactacctgttccatggccaacacttgtcactactttcggttatggtgttcaatgctttgcgagatacccagatcatatgaaacagcatgactttttcaagagtgccatgcccgaaggttatgtacaggaaagaactatatttttcaaagatgacgggaactacaagacacgtgctgaagtcaagtttgaaggtgatacccttgttaatagaatcgagttaaaaggtattgattttaaagaagatggaaacattcttggacacaaattggaatacaactataactcacacaatgtatacatcatggcagacaaacaaaagaatggaatcaaagttaacttcaaaattagacacaacattgaagatggaagcgttcaactagcagaccattatcaacaaaatactccaattggcgatggccctgtccttttaccagacaaccattacctgtccacacaatctgccctttcgaaagatcccaacgaaaagagagaccacatggtccttcttgagtttgtaacagctgctgggattacacatggcatggatgaactatacaaataataa BBa_J05215_sequence 1 cctcgcccccgggggcgagggccccgcctccggaggcgggg BBa_J05218_sequence 1 cgtcccctccggaggggacggccccgcctccggaggcgggg BBa_J05110_sequence 1 atgctggaaccgggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccgcagcgataaactggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagcgatccgggccatctggtgcgccatcagcgcacccataccggcgaaaaaccgtataaatgcccggaatgcggcaaaagctttagccagcgcgcgcatctggaacgccatcagcgcacccataccggcaaaaaaaccagcacccgcattcaggtgctggaagaaaaagtggaaatgctgcataacctggtggatgattggcagcgcaaatataaactgctggaaagcgaatttagcgataccaaagaaaacctgcaaaaaagcattgcgctgaacaacgaactgcaaaaagcgctgtaataactctgatagtgctagtgtagatctc BBa_B0012_sequence 1 tcacactggctcaccttcgggtgggcctttctgcgtttata igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z