BBa_J120025
1
BBa_J120025
TACE(Tumor necrosis factor-α-converting enzyme) aka ADAM17 endopepsidase (H. sapiens)
2012-04-02T11:00:00Z
2015-08-31T04:08:29Z
it is a genomic sequence.
ADAM17, also known as tumor necrosis factor ∂ converting enzyme (TACE) is activated by several tyrosine kinase receptors, and is known to be over expressed in cancerous cells. It is an integral transmembrane metalloprotease that produces TNF-∂ and participates in ectodomain shedding of other transmembrane proteins. This part has to be linked with promoter in order to be expressed in yeast.
false
false
_617_
0
12909
9
Not in stock
false
atgcgccagagcctgctgtttctgaccagcgtggtgccgtttgtgctggcgccgcgcccg
ccggatgatccgggctttggcccgcatcagcgcctggaaaaactggatagcctgctgagc
gattatgatattctgagcctgagcaacattcagcagcatagcgtgcgcaaacgcgatctg
cagaccagcacccatgtggaaaccctgctgacctttagcgcgctgaaacgccattttaaa
ctgtatctgaccagcagcaccgaacgctttagccagaactttaaagtggtggtggtggat
ggcaaaaacgaaagcgaatataccgtgaaatggcaggatttttttaccggccatgtggtg
ggcgaaccggatagccgcgtgctggcgcatattcgcgatgatgatgtgattattcgcatt
aacaccgatggcgcggaatataacattgaaccgctgtggcgctttgtgaacgataccaaa
gataaacgcatgctggtgtataaaagcgaagatattaaaaacgtgagccgcctgcagagc
ccgaaagtgtgcggctatctgaaagtggataacgaagaactgctgccgaaaggcctggtg
gatcgcgaaccgccggaagaactggtgcatcgcgtgaaacgccgcgcggatccggatccg
atgaaaaacacctgcaaactgctggtggtggcggatcatcgcttttatcgctatatgggc
cgcggcgaagaaagcaccaccaccaactatctgattgaactgattgatcgcgtggatgat
atttatcgcaacaccagctgggataacgcgggctttaaaggctatggcattcagattgaa
cagattcgcattctgaaaagcccgcaggaagtgaaaccgggcgaaaaacattataacatg
gcgaaaagctatccgaacgaagaaaaagatgcgtgggatgtgaaaatgctgctggaacag
tttagctttgatattgcggaagaagcgagcaaagtgtgcctggcgcatctgtttacctat
caggattttgatatgggcaccctgggcctggcgtatgtgggcagcccgcgcgcgaacagc
catggcggcgtgtgcccgaaagcgtattatagcccggtgggcaaaaaaaacatttatctg
aacagcggcctgaccagcaccaaaaactatggcaaaaccattctgaccaaagaagcggat
ctggtgaccacccatgaactgggccataactttggcgcggaacatgatccggatggcctg
gcggaatgcgcgccgaacgaagatcagggcggcaaatatgtgatgtatccgattgcggtg
agcggcgatcatgaaaacaacaaaatgtttagcaactgcagcaaacagagcatttataaa
accattgaaagcaaagcgcaggaatgctttcaggaacgcagcaacaaagtgtgcggcaac
agccgcgtggatgaaggcgaagaatgcgatccgggcattatgtatctgaacaacgatacc
tgctgcaacagcgattgcaccctgaaagaaggcgtgcagtgcagcgatcgcaacagcccg
tgctgcaaaaactgccagtttgaaaccgcgcagaaaaaatgccaggaagcgattaacgcg
acctgcaaaggcgtgagctattgcaccggcaacagcagcgaatgcccgccgccgggcaac
gcggaagatgataccgtgtgcctggatctgggcaaatgcaaagatggcaaatgcattccg
ttttgcgaacgcgaacagcagctggaaagctgcgcgtgcaacgaaaccgataacagctgc
aaagtgtgctgccgcgatctgagcggccgctgcgtgccgtatgtggatgcggaacagaaa
aacctgtttctgcgcaaaggcaaaccgtgcaccgtgggcttttgcgatatgaacggcaaa
tgcgaaaaacgcgtgcaggatgtgattgaacgcttttgggattttattgatcagctgagc
attaacacctttggcaaatttctggcggataacattgtgggcagcgtgctggtgtttagc
ctgattttttggattccgtttagcattctggtgcattgcgtggataaaaaactggataaa
cagtatgaaagcctgagcctgtttcatccgagcaacgtggaaatgctgagcagcatggat
agcgcgagcgtgcgcattattaaaccgtttccggcgccgcagaccccgggccgcctgcag
ccggcgccggtgattccgagcgcgccggcggcgccgaaactggatcatcagcgcatggat
accattcaggaagatccgagcaccgatagccatatggatgaagatggctttgaaaaagat
ccgtttccgaacagcagcaccgcggcgaaaagctttgaagatctgaccgatcatccggtg
acccgcagcgaaaaagcggcgagctttaaactgcagcgccagaaccgcgtggatagcaaa
gaaaccgaatgc
false
Sanjana Gurrala, Xiaoyang Feng, Stephen Cain, Orijit Kar, Sahil Sharma
BBa_B0011
1
BBa_B0011
LuxICDABEG (+/-)
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Derived from luxICDABEG operon terminator of Vibrio fischeri <genbank>AF170104</genbank>.
Released HQ 2013
Bidirectional transcriptional terminator consisting of a 22 bp stem-loop.</p>
false
false
_1_
0
24
7
In stock
false
<P> <P>In the naturally-occuring sequence there is a mismatch in the stem of the stem loop. This can be corrected via an A->G mutation (at position 40 -- sequence coordinate/not MFOLD coordinate). The above sequence does not reflect this mutation (but the MFOLD image does). This terminator's location cannot be found using some inverted repeat detectors like PALINDROME because it is too short and contains a mismatch. This one was found with the help of Tom Knight. It lies between two coding regions that point towards eachother.<P>
true
Reshma Shetty
annotation7019
1
BBa_B0011
range7019
1
1
46
annotation1683
1
stem_loop
range1683
1
13
35
BBa_J63006
1
GAL1
yeast GAL1 promoter
2006-10-10T11:00:00Z
2015-08-31T01:56:26Z
genomic GAL1 locus
Released HQ 2013
GAL1 promoter from S. cerevisiae
false
true
_97_
0
545
97
In stock
false
unchanged from genomic sequence
true
Caroline Ajo-Franklin
BBa_J120026
1
BBa_J120026
Composite part containing Yeast promoter along with ADAM17.
2012-04-03T11:00:00Z
2015-08-31T04:08:29Z
Later
The composite part consist of Yeast promoter BBa_J63006 along with the ADAM17. This will be tested in a Yeast cell for the expression of ADAM17.
false
false
_617_
0
12298
9
Not in stock
false
There are no designs considerations.
false
Xiaoyang Feng, Orijit Kar, Stephen Cain, Sanjana Gurrala, Sahil Sharma
component2172142
1
BBa_J63006
component2172143
1
BBa_J120025
component2172144
1
BBa_B0011
annotation2172144
1
BBa_B0011
range2172144
1
3025
3070
annotation2172142
1
BBa_J63006
range2172142
1
1
549
annotation2172143
1
BBa_J120025
range2172143
1
550
3024
BBa_J63006_sequence
1
ccccattatcttagcctaaaaaaaccttctctttggaactttcagtaatacgcttaactgctcattgctatattgaagtacggattagaagccgccgagcgggtgacagccctccgaaggaagactctcctccgtgcgtcctcgtcttcaccggtcgcgttcctgaaacgcagatgtgcctcgcgccgcactgctccgaacaataaagattctacaatactagcttttatggttatgaagaggaaaaattggcagtaacctggccccacaaaccttcaaatgaacgaatcaaattaacaaccataggatgataatgcgattagttttttagccttatttctggggtaattaatcagcgaagcgatgatttttgatctattaacagatatataaatgcaaaaactgcataaccactttaactaatactttcaacattttcggtttgtattacttcttattcaaatgtaataaaagtatcaacaaaaaattgttaatatacctctatactttaacgtcaaggaggaaactagacccgccgccaccatggag
BBa_J120025_sequence
1
atgaggcagtctctcctattcctgaccagcgtggttcctttcgtgctggcgccgcgacctccggatgacccgggcttcggcccccaccagagactcgagaagcttgattctttgctctcagactacgatattctctctttatctaatatccagcagcattcggtaagaaaaagagatctacagacttcaacacatgtagaaacactactaactttttcagctttgaaaaggcattttaaattatacctgacatcaagtactgaacgtttttcacaaaatttcaaggtcgtggtggtggatggtaaaaacgaaagcgagtacactgtaaaatggcaggacttcttcactggacacgtggttggtgagcctgactctagggttctagcccacataagagatgatgatgttataatcagaatcaacacagatggggccgaatataacatagagccactttggagatttgttaatgataccaaagacaaaagaatgttagtttataaatctgaagatatcaagaatgtttcacgtttgcagtctccaaaagtgtgtggttatttaaaagtggataatgaagagttgctcccaaaagggttagtagacagagaaccacctgaagagcttgttcatcgagtgaaaagaagagctgacccagatcccatgaagaacacgtgtaaattattggtggtagcagatcatcgcttctacagatacatgggcagaggggaagagagtacaactacaaattacttaatagagctaattgacagagttgatgacatctatcggaacacttcatgggataatgcaggttttaaaggctatggaatacagatagagcagattcgcattctcaagtctccacaagaggtaaaacctggtgaaaagcactacaacatggcaaaaagttacccaaatgaagaaaaggatgcttgggatgtgaagatgttgctagagcaatttagctttgatatagctgaggaagcatctaaagtttgcttggcacaccttttcacataccaagattttgatatgggaactcttggattagcttatgttggctctcccagagcaaacagccatggaggtgtttgtccaaaggcttattatagcccagttgggaagaaaaatatctatttgaatagtggtttgacgagcacaaagaattatggtaaaaccatccttacaaaggaagctgacctggttacaactcatgaattgggacataattttggagcagaacatgatccggatggtctagcagaatgtgccccgaatgaggaccagggagggaaatatgtcatgtatcccatagctgtgagtggcgatcacgagaacaataagatgttttcaaattgcagtaaacaatcaatctataagaccattgaaagtaaggcccaggagtgttttcaagaacgcagcaataaagtttgtgggaactcgagggtggatgaaggagaagagtgtgatcctggcatcatgtatctgaacaacgacacctgctgcaacagcgactgcacgttgaaggaaggtgtccagtgcagtgacaggaacagtccttgctgtaaaaactgtcagtttgagactgcccagaagaagtgccaggaggcgattaatgctacttgcaaaggcgtgtcctactgcacaggtaatagcagtgagtgcccgcctccaggaaatgctgaagatgacactgtttgcttggatcttggcaagtgtaaggatgggaaatgcatccctttctgcgagagggaacagcagctggagtcctgtgcatgtaatgaaactgacaactcctgcaaggtgtgttgcagggacctttctggccgctgtgtgccctatgtcgatgctgaacaaaagaacttatttttgaggaaaggaaagccctgtacagtaggattttgtgacatgaatggcaaatgtgagaaacgagtacaggatgtaattgaacgattttgggatttcattgaccagctgagcatcaatacttttggaaagtttttagcagacaacatcgttgggtctgtcctggttttctccttgatattttggattcctttcagcattcttgtccattgtgtggataagaaattggataaacagtatgaatctctgtctctgtttcaccccagtaacgtcgaaatgctgagcagcatggattctgcatcggttcgcattatcaaaccctttcctgcgccccagactccaggccgcctgcaacctgcccctgtgatcccttcggcgccagcagctccaaaactggaccaccagagaatggacaccatccaggaagaccccagcacagactcacatatggacgaggatgggtttgagaaggaccccttcccaaatagcagcacagctgccaagtcatttgaggatctcacggaccatccggtcaccagaagtgaaaaggctgcctcctttaaactgcaacgtcagaatcgtgttgacagcaaagaaacagagtgctaa
BBa_J120026_sequence
1
ccccattatcttagcctaaaaaaaccttctctttggaactttcagtaatacgcttaactgctcattgctatattgaagtacggattagaagccgccgagcgggtgacagccctccgaaggaagactctcctccgtgcgtcctcgtcttcaccggtcgcgttcctgaaacgcagatgtgcctcgcgccgcactgctccgaacaataaagattctacaatactagcttttatggttatgaagaggaaaaattggcagtaacctggccccacaaaccttcaaatgaacgaatcaaattaacaaccataggatgataatgcgattagttttttagccttatttctggggtaattaatcagcgaagcgatgatttttgatctattaacagatatataaatgcaaaaactgcataaccactttaactaatactttcaacattttcggtttgtattacttcttattcaaatgtaataaaagtatcaacaaaaaattgttaatatacctctatactttaacgtcaaggaggaaactagacccgccgccaccatggagatgaggcagtctctcctattcctgaccagcgtggttcctttcgtgctggcgccgcgacctccggatgacccgggcttcggcccccaccagagactcgagaagcttgattctttgctctcagactacgatattctctctttatctaatatccagcagcattcggtaagaaaaagagatctacagacttcaacacatgtagaaacactactaactttttcagctttgaaaaggcattttaaattatacctgacatcaagtactgaacgtttttcacaaaatttcaaggtcgtggtggtggatggtaaaaacgaaagcgagtacactgtaaaatggcaggacttcttcactggacacgtggttggtgagcctgactctagggttctagcccacataagagatgatgatgttataatcagaatcaacacagatggggccgaatataacatagagccactttggagatttgttaatgataccaaagacaaaagaatgttagtttataaatctgaagatatcaagaatgtttcacgtttgcagtctccaaaagtgtgtggttatttaaaagtggataatgaagagttgctcccaaaagggttagtagacagagaaccacctgaagagcttgttcatcgagtgaaaagaagagctgacccagatcccatgaagaacacgtgtaaattattggtggtagcagatcatcgcttctacagatacatgggcagaggggaagagagtacaactacaaattacttaatagagctaattgacagagttgatgacatctatcggaacacttcatgggataatgcaggttttaaaggctatggaatacagatagagcagattcgcattctcaagtctccacaagaggtaaaacctggtgaaaagcactacaacatggcaaaaagttacccaaatgaagaaaaggatgcttgggatgtgaagatgttgctagagcaatttagctttgatatagctgaggaagcatctaaagtttgcttggcacaccttttcacataccaagattttgatatgggaactcttggattagcttatgttggctctcccagagcaaacagccatggaggtgtttgtccaaaggcttattatagcccagttgggaagaaaaatatctatttgaatagtggtttgacgagcacaaagaattatggtaaaaccatccttacaaaggaagctgacctggttacaactcatgaattgggacataattttggagcagaacatgatccggatggtctagcagaatgtgccccgaatgaggaccagggagggaaatatgtcatgtatcccatagctgtgagtggcgatcacgagaacaataagatgttttcaaattgcagtaaacaatcaatctataagaccattgaaagtaaggcccaggagtgttttcaagaacgcagcaataaagtttgtgggaactcgagggtggatgaaggagaagagtgtgatcctggcatcatgtatctgaacaacgacacctgctgcaacagcgactgcacgttgaaggaaggtgtccagtgcagtgacaggaacagtccttgctgtaaaaactgtcagtttgagactgcccagaagaagtgccaggaggcgattaatgctacttgcaaaggcgtgtcctactgcacaggtaatagcagtgagtgcccgcctccaggaaatgctgaagatgacactgtttgcttggatcttggcaagtgtaaggatgggaaatgcatccctttctgcgagagggaacagcagctggagtcctgtgcatgtaatgaaactgacaactcctgcaaggtgtgttgcagggacctttctggccgctgtgtgccctatgtcgatgctgaacaaaagaacttatttttgaggaaaggaaagccctgtacagtaggattttgtgacatgaatggcaaatgtgagaaacgagtacaggatgtaattgaacgattttgggatttcattgaccagctgagcatcaatacttttggaaagtttttagcagacaacatcgttgggtctgtcctggttttctccttgatattttggattcctttcagcattcttgtccattgtgtggataagaaattggataaacagtatgaatctctgtctctgtttcaccccagtaacgtcgaaatgctgagcagcatggattctgcatcggttcgcattatcaaaccctttcctgcgccccagactccaggccgcctgcaacctgcccctgtgatcccttcggcgccagcagctccaaaactggaccaccagagaatggacaccatccaggaagaccccagcacagactcacatatggacgaggatgggtttgagaaggaccccttcccaaatagcagcacagctgccaagtcatttgaggatctcacggaccatccggtcaccagaagtgaaaaggctgcctcctttaaactgcaacgtcagaatcgtgttgacagcaaagaaacagagtgctaaagagaatataaaaagccagattattaatccggcttttttattattt
BBa_B0011_sequence
1
agagaatataaaaagccagattattaatccggcttttttattattt
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z