BBa_J64804 1 BBa_J64804 The promoter region (inclusive of regulator binding sites) of the B. subtilis RocDEF operon 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z Information was obtained from: http://dbtbs.hgc.jp/COG/prom/rocDEF.html. This is the reported promoter region from the Bacillus subtilis RocDEF operon as taken from the DBTBS website (http://dbtbs.hgc.jp/). Base 1 to base 21 contains the binding site for the binding factor, RocR. The sequence, TATGCAAAAGAATTTTGCACT, reportedly contains the consensus sequence for binding of this factor. Base 42 to base 62 contains another binding site for the RocR binding factor, with ATATCAGAATGTTTTTGCACC as the binding consensus for this sequence. Bases 113-135 outline the binding site of the binding factor AhrC (CTTGCATTTATATAAAGGGAAAG). Bases 96 to 135 outline the promoter region for this operon (CTTGATTTGGCACAGAACTTGCATTTATATAAAGGGAAAG). false false _98_ 0 1428 98 Not in stock false This sequence only outlines the reported promoter region as ascertained from the online resource described above, and may lack nucleotides not described by the operon analysis used. false Sai Duriseti annotation1920952 1 RocR Binding Site range1920952 1 42 62 annotation1920953 1 Promoter range1920953 1 96 135 annotation1920951 1 RocR Binding Site range1920951 1 1 21 annotation1920955 1 AhrC range1920955 1 113 131 BBa_J64971 1 BBa_J64971 rocF coding sequence from bacillus subtilis subsp. subtilis str. 168 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z NCBI Gene / Genbank The is the genomic coding sequence for the rocF gene of the rocDEF operon in b. subtilis false false _98_ 0 1426 98 Not in stock false None, this is a class exercise false Jeremy Phillips annotation1920940 1 rbs range1920940 1 17 21 BBa_J64809 1 BBa_J64809 RocF RBS 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z n RBS upstream of RocF false false _98_ 0 1423 98 Not in stock false n false David Stanley BBa_J64801 1 BBa_J64801 RocDEF Operon 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z B. Subtilis, SubtiList RocDEF Operon false false _98_ 0 1423 98 Not in stock false none false David Stanley component1920971 1 BBa_J64971 component1920965 1 BBa_J64804 component1920967 1 BBa_J64808 component1920968 1 BBa_J64806 component1920969 1 BBa_J64809 component1920966 1 BBa_J64805 annotation1920968 1 BBa_J64806 range1920968 1 1349 2755 annotation1920965 1 BBa_J64804 range1920965 1 1 135 annotation1920971 1 BBa_J64971 range1920971 1 2784 3674 annotation1920967 1 BBa_J64808 range1920967 1 1329 1342 annotation1920969 1 BBa_J64809 range1920969 1 2764 2777 annotation1920966 1 BBa_J64805 range1920966 1 142 1320 BBa_J64806 1 BBa_J64806 RocE 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z SubtiList RocE from B. Subtilis false true _98_ 0 1423 98 Not in stock false none false David Stanley BBa_J64808 1 BBa_J64808 RocE RBS 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z n RBS preceding RocE false false _98_ 0 1423 98 Not in stock false n false David Stanley BBa_J64805 1 BBa_J64805 RocD 2007-03-19T12:00:00Z 2015-05-08T01:08:17Z >B. subtilis 168|BG10722|rocD: 1203 bp - ornithine aminotransferase RocD from the RocDEF promoter, B. Subtilis false false _98_ 0 1423 98 Not in stock false none false David Stanley BBa_J64809_sequence 1 aggtggaatcacag BBa_J64971_sequence 1 atggataaaacgatttcggttattggaatgccaatggatttaggacaagcacgacgcggagtggatatgggcccgagtgccatccggtacgctcatctgatcgagaggctgtcagacatggggtatacggttgaagatctcggtgacattccgatcaatcgcgaaaaaatcaaaaatgacgaggaactgaaaaacctgaattccgttttggcgggaaatgaaaaactcgcgcaaaaggtcaacaaagtcattgaagagaaaaaattcccgcttgtcctgggcggtgaccacagtattgcgatcggcacgcttgcaggcacagcgaagcattacgataatctcggcgtcatctggtatgacgcgcacggcgatttgaatacacttgaaacttcaccatcgggcaatattcacggcatgccgctcgcggtcagcctaggcattggccacgagtcactggttaaccttgaaggctacgcgcctaaaatcaaaccggaaaacgtcgtcatcattggcgcccggtcacttgatgaaggggagcgcaagtacattaaggaaagcggcatgaaggtgtacacaatgcacgaaatcgatcgtcttggcatgacaaaggtcattgaagaaacccttgattatttatcagcatgtgatggcgtccatctgagccttgatctggacggacttgatccgaacgacgcaccgggtgtcggaacccctgtcgtcggcggcatcagctaccgggagagccatttggctatggaaatgctgtatgacgcaggcatcattacctcagccgaattcgttgaggttaacccgatccttgatcacaaaaacaaaacgggcaaaacagcagtagagctcgtagaatccctgttagggaagaagctgctgtaa BBa_J64806_sequence 1 atgaatacaaaccaagataacggaaatcagctccagcggacaatgaaatcacgccatttgttcatgatttcattgggcggagtgatcggaaccggtttcttccttggaaccgggtttaccattaaccaagcgggaccgctcggcgcggttctgtcctatttagtgggcggctttatcatgtttttgaccatgctctgcttaggagagctggcagtcgcctttcctgtgtcggggtccttccagacctatgccacgaaatttatcagcccggccttcgggtttgcgttcggctggctgtactggctcggctgggcggttacatgcgccattgaatttttatcagcggggcagctgatgcaacgctggtttccgcatatagacgtgtggatctggtgtctggtctttgcggcactgatgtttattttaaatgcgatcaccacaaaagcctttgcggaatctgaattctggttctcaggcattaaaattttgattatccttttatttattattctcggcggagctgccatgtttggcctgattgatctgaagggcggagagcaggcgccgtttttgacacatttttatgaagacgggttatttccgaacggcataaaggcaatgctgattacgatgattactgtgaactttgcgtttcaggggactgagctgatcggggttgcagccggagaaagtgaagaccctgaaaaaacgattccgcggtccatcaaacagacagtatggagaacgcttgtgttctttgtgctttcaatcattgtcattgccggcatgattccgtggaaacaggcgggtgtcgtggaaagtccatttgttgccgtatttgagcaaatcggaatcccatatgcagctgatatcatgaactttgttattttaatcgcactgttatctgttgcgaactcaggtttatacgcatcaacacgtattctgtacgcgatggcgaatgaaggacaagccttcaaagcgcttggcaaaacaaatcagcgcggtgtaccgatgtactcgttaatcgtaacgatggctgtggcctgcctatcacttctgacaaagtttgcgcaggctgaaaccgtatatatggtactgttatctttggcgggcatgagcgcgcaggtcggctggattacgatctcgctttcccaaatcatgttcagacgcaaatatatccgtgagggcgggaagatagaagatttgaaatttaaaacaccgctgtacccggtgcttccgctgatcggcctaacgttaaatacggtcgtgctcatcagtcttgcatttgatccggagcagcgtatcgcgctgtattgcggcgtaccgtttatgatcatttgctacatcatttatcatgtcgtcattaaaaaacgccagcaggcaaatcgtcagctagagctttaataa BBa_J64805_sequence 1 atgacagctttatctaaatccaaagaaattattgatcagacgtctcattacggagccaacaattatcacccgctcccgattgttatttctgaagcgctgggtgcttgggtaaaggacccggaaggcaatgaatatatggatatgctgagtgcttactctgcggtaaaccaggggcacagacacccgaaaatcattcaggcattaaaggatcaggctgataaaatcaccctcacgtcacgcgcgtttcataacgatcagcttgggccgttttacgaaaaaacagctaaactgacaggcaaagagatgattctgccgatgaatacaggagccgaagcggttgaatccgcggtgaaagcggcgagacgctgggcgtatgaagtgaagggcgtagctgacaatcaagcggaaattatcgcatgtgtcgggaacttccacggccgcacgatgctggcggtatctctttcttctgaagaggaatataaacgaggattcggcccgatgcttccaggaatcaaactcattccttacggcgatgtggaagcgcttcgacaggccattacgccgaatacagcggcattcttgtttgaaccgattcaaggcgaagcgggcattgtgattccgcctgaaggatttttacaggaagcggcggcgatttgtaaggaagagaatgtcttgtttattgcggatgaaattcagacgggtctcggacgtacaggcaagacgtttgcctgtgactgggacggcattgttccggatatgtatatcttgggcaaagcgcttggcggcggtgtgttcccgatctcttgcattgcggcggaccgcgagatcctaggcgtgtttaaccctggctcacacggctcaacatttggtggaaacccgcttgcatgtgcagtgtctatcgcttcattagaagtgctggaggatgaaaagctggcggatcgttctcttgaacttggtgaatactttaaaagcgagcttgagagtattgacagccctgtcattaaagaagtccgcggcagagggctgtttatcggtgtggaattgactgaagcggcacgtccgtattgtgagcgtttgaaggaagagggacttttatgcaaggaaacgcatgatacagtcattcgttttgcaccgccattaatcatttccaaagaggacttggattgggcggcataataa BBa_J64808_sequence 1 aaggggtgcagaat BBa_J64804_sequence 1 tatgcaaaagaattttgcacttgctgaaattttcgctcgaaatatcagaatgtttttgcaccttgtcctcgaaaattgtagaaaacacacgaattcttgatttggcacagaacttgcatttatataaagggaaag BBa_J64801_sequence 1 tatgcaaaagaattttgcacttgctgaaattttcgctcgaaatatcagaatgtttttgcaccttgtcctcgaaaattgtagaaaacacacgaattcttgatttggcacagaacttgcatttatataaagggaaagtactagatgacagctttatctaaatccaaagaaattattgatcagacgtctcattacggagccaacaattatcacccgctcccgattgttatttctgaagcgctgggtgcttgggtaaaggacccggaaggcaatgaatatatggatatgctgagtgcttactctgcggtaaaccaggggcacagacacccgaaaatcattcaggcattaaaggatcaggctgataaaatcaccctcacgtcacgcgcgtttcataacgatcagcttgggccgttttacgaaaaaacagctaaactgacaggcaaagagatgattctgccgatgaatacaggagccgaagcggttgaatccgcggtgaaagcggcgagacgctgggcgtatgaagtgaagggcgtagctgacaatcaagcggaaattatcgcatgtgtcgggaacttccacggccgcacgatgctggcggtatctctttcttctgaagaggaatataaacgaggattcggcccgatgcttccaggaatcaaactcattccttacggcgatgtggaagcgcttcgacaggccattacgccgaatacagcggcattcttgtttgaaccgattcaaggcgaagcgggcattgtgattccgcctgaaggatttttacaggaagcggcggcgatttgtaaggaagagaatgtcttgtttattgcggatgaaattcagacgggtctcggacgtacaggcaagacgtttgcctgtgactgggacggcattgttccggatatgtatatcttgggcaaagcgcttggcggcggtgtgttcccgatctcttgcattgcggcggaccgcgagatcctaggcgtgtttaaccctggctcacacggctcaacatttggtggaaacccgcttgcatgtgcagtgtctatcgcttcattagaagtgctggaggatgaaaagctggcggatcgttctcttgaacttggtgaatactttaaaagcgagcttgagagtattgacagccctgtcattaaagaagtccgcggcagagggctgtttatcggtgtggaattgactgaagcggcacgtccgtattgtgagcgtttgaaggaagagggacttttatgcaaggaaacgcatgatacagtcattcgttttgcaccgccattaatcatttccaaagaggacttggattgggcggcataataatactagagaaggggtgcagaattactagatgaatacaaaccaagataacggaaatcagctccagcggacaatgaaatcacgccatttgttcatgatttcattgggcggagtgatcggaaccggtttcttccttggaaccgggtttaccattaaccaagcgggaccgctcggcgcggttctgtcctatttagtgggcggctttatcatgtttttgaccatgctctgcttaggagagctggcagtcgcctttcctgtgtcggggtccttccagacctatgccacgaaatttatcagcccggccttcgggtttgcgttcggctggctgtactggctcggctgggcggttacatgcgccattgaatttttatcagcggggcagctgatgcaacgctggtttccgcatatagacgtgtggatctggtgtctggtctttgcggcactgatgtttattttaaatgcgatcaccacaaaagcctttgcggaatctgaattctggttctcaggcattaaaattttgattatccttttatttattattctcggcggagctgccatgtttggcctgattgatctgaagggcggagagcaggcgccgtttttgacacatttttatgaagacgggttatttccgaacggcataaaggcaatgctgattacgatgattactgtgaactttgcgtttcaggggactgagctgatcggggttgcagccggagaaagtgaagaccctgaaaaaacgattccgcggtccatcaaacagacagtatggagaacgcttgtgttctttgtgctttcaatcattgtcattgccggcatgattccgtggaaacaggcgggtgtcgtggaaagtccatttgttgccgtatttgagcaaatcggaatcccatatgcagctgatatcatgaactttgttattttaatcgcactgttatctgttgcgaactcaggtttatacgcatcaacacgtattctgtacgcgatggcgaatgaaggacaagccttcaaagcgcttggcaaaacaaatcagcgcggtgtaccgatgtactcgttaatcgtaacgatggctgtggcctgcctatcacttctgacaaagtttgcgcaggctgaaaccgtatatatggtactgttatctttggcgggcatgagcgcgcaggtcggctggattacgatctcgctttcccaaatcatgttcagacgcaaatatatccgtgagggcgggaagatagaagatttgaaatttaaaacaccgctgtacccggtgcttccgctgatcggcctaacgttaaatacggtcgtgctcatcagtcttgcatttgatccggagcagcgtatcgcgctgtattgcggcgtaccgtttatgatcatttgctacatcatttatcatgtcgtcattaaaaaacgccagcaggcaaatcgtcagctagagctttaataatactagagaggtggaatcacagtactagatggataaaacgatttcggttattggaatgccaatggatttaggacaagcacgacgcggagtggatatgggcccgagtgccatccggtacgctcatctgatcgagaggctgtcagacatggggtatacggttgaagatctcggtgacattccgatcaatcgcgaaaaaatcaaaaatgacgaggaactgaaaaacctgaattccgttttggcgggaaatgaaaaactcgcgcaaaaggtcaacaaagtcattgaagagaaaaaattcccgcttgtcctgggcggtgaccacagtattgcgatcggcacgcttgcaggcacagcgaagcattacgataatctcggcgtcatctggtatgacgcgcacggcgatttgaatacacttgaaacttcaccatcgggcaatattcacggcatgccgctcgcggtcagcctaggcattggccacgagtcactggttaaccttgaaggctacgcgcctaaaatcaaaccggaaaacgtcgtcatcattggcgcccggtcacttgatgaaggggagcgcaagtacattaaggaaagcggcatgaaggtgtacacaatgcacgaaatcgatcgtcttggcatgacaaaggtcattgaagaaacccttgattatttatcagcatgtgatggcgtccatctgagccttgatctggacggacttgatccgaacgacgcaccgggtgtcggaacccctgtcgtcggcggcatcagctaccgggagagccatttggctatggaaatgctgtatgacgcaggcatcattacctcagccgaattcgttgaggttaacccgatccttgatcacaaaaacaaaacgggcaaaacagcagtagagctcgtagaatccctgttagggaagaagctgctgtaa igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z