BBa_K1020002 1 BBa_K1020002 alkane regulatory protein ALKR 2013-08-17T11:00:00Z 2015-05-08T01:08:43Z Acinetobacter baylyi ADP1 AlkR is a transcriptional regulator belonging to AraC/Xyls family, which could detect a broad range of alkanes and alkenes with carbon chain length from C7 to C36. It is said that AlkR is the only bioreporter that is able to detect alkane with carbon chain length greater than C18. false false _1327_ 0 16881 9 Not in stock false false Yue Liu annotation2331899 1 AlkR range2331899 1 1 927 BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_K1020001 1 BBa_K1020001 PalkM promoter with reporter gene 2013-08-17T11:00:00Z 2015-05-08T01:08:43Z Acinetobacter baylyi ADP1 alkM promoter is a very special promoter for alkane detector,which is activated by AlkR dimer protein with the combination of alkane molecular. The downstream RFP gene is the reporter gene of the biosensor. false false _1327_ 0 16881 9 It's complicated false We need a long and strong terminator to end this part. false Yue Liu annotation2331897 1 RFP range2331897 1 198 879 annotation2331898 1 terminator range2331898 1 885 1013 annotation2331896 1 alkM promoter range2331896 1 1 178 BBa_J23100 1 BBa_J23100 constitutive promoter family member 2006-08-03T11:00:00Z 2015-08-31T04:08:40Z Isolated from library of promoters Released HQ 2013 Replace later false true _52_ 0 483 95 In stock true N/A true John Anderson BBa_K1020004 1 BBa_K1020004 Biosensor for alkane detection 2013-08-17T11:00:00Z 2015-05-08T01:08:43Z Acinetobacter baylyi ADP1 AlkR is a transcriptional regulator belonging to AraC/Xyls family, which could detect a broad range of alkanes and alkenes with carbon chain length from C7 to C36. It is said that AlkR is the only bioreporter that is able to detect alkane with carbon chain length greater than C18. The mechanism is that Alkane were presumably recognized by AlkR regulatory protein and their interaction triggered a conformation change of AlkR dimers which isomerizes the promoter-RNAP complex and lead to the activation of alkM gene. AlkR regulatory protein includes C-terminal DNA-binding domain(CTD) for promoter binding and N-terminal domain(NTD) for inducer recognition. false false _1327_ 0 16881 9 It's complicated false We choise a constitutive promoter for AlkR gene and in case of interference, we use a long and strong terminator. false Yue Liu component2331908 1 BBa_K1020002 component2331903 1 BBa_K1020001 component2331904 1 BBa_J23100 component2331906 1 BBa_B0034 annotation2331906 1 BBa_B0034 range2331906 1 1065 1076 annotation2331908 1 BBa_K1020002 range2331908 1 1083 2009 annotation2331904 1 BBa_J23100 range2331904 1 1022 1056 annotation2331903 1 BBa_K1020001 range2331903 1 1 1013 BBa_J23100_sequence 1 ttgacggctagctcagtcctaggtacagtgctagc BBa_B0034_sequence 1 aaagaggagaaa BBa_K1020002_sequence 1 atggatgcacttagtaaaatttttgatgatattcatttaaataaatctgaatatctctatgtaaaaactcaaggagaatgggcatttcatatgcttgcccaagatgctttgattgctcacattattttaatgggttctgctcatttcacattacaggatggtacgacacaaaccgcttattcgggagatattgtgcttattccttctgggcaagctcattttgtctcaaatgatgctcagaacaaactaattgattgttccaacattcagtctttttttgatggacaccgcaatgatgccattgagttaggcacaacatcttcggatcatggtttaatttttactgtgcggagccatatcgatatgcatatgggtagccctttactcaatgctttaccatcactgatacatattcatcacgcaatgagctcaactggcccagagtggttacgcgtcggtttatattttgtggcacttgaaacccagcgtattcaaccaggacgagataaaatatttgaccacttgatgagcatcctatttatagaatgtgtccgcgatcatattgcccagcttgatgaccccaaaagctggttaactgcactcatgcatcccgaattatctaatgcgctcgcagctattcatgcttaccccgaaaaaccttggactgtagagagtttggcagatcaatgttgcatgtcacggtctaaatttgccacactttttcaaagtattgttcatgagacccctctcgcttatcttcaacaacatcgccttcgtctggccgtacagttattaaaaaccagtcagttaaatattcagcaaattgccaataaagtcggatactcctcagaaacagcttttagtcaggcatttaaacgtcaatttgaacaatctcctaaacactatcgccagcaatcatgataataa BBa_K1020004_sequence 1 agcgcgttaaaaattcttatttgagcaagagtatagaatgaggttgtagcttatacatgtgattttaggacattgacatggttgaaaatgccaaagactttgacataggttttttggacgataacgactgtttttaatatataagatggatgattatgagcagtatgaatagaggatagaaagaggagaaatactagatggcttcctccgaagacgttatcaaagagttcatgcgtttcaaagttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaaggtgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactgaaagttaccaaaggtggtccgctgccgttcgcttgggacatcctgtccccgcagttccagtacggttccaaagcttacgttaaacacccggctgacatcccggactacctgaaactgtccttcccggaaggtttcaaatgggaacgtgttatgaacttcgaagacggtggtgttgttaccgttacccaggactcctccctgcaagacggtgagttcatctacaaagttaaactgcgtggtaccaacttcccgtccgacggtccggttatgcagaaaaaaaccatgggttgggaagcttccaccgaacgtatgtacccggaagacggtgctctgaaaggtgaaatcaaaatgcgtctgaaactgaaagacggtggtcactacgacgctgaagttaaaaccacctacatggctaaaaaaccggttcagctgccgggtgcttacaaaaccgacatcaaactggacatcacctcccacaacgaagactacaccatcgttgaacagtacgaacgtgctgaaggtcgtcactccaccggtgcttaataaactagaccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagttgacggctagctcagtcctaggtacagtgctagctactagagaaagaggagaaatactagatggatgcacttagtaaaatttttgatgatattcatttaaataaatctgaatatctctatgtaaaaactcaaggagaatgggcatttcatatgcttgcccaagatgctttgattgctcacattattttaatgggttctgctcatttcacattacaggatggtacgacacaaaccgcttattcgggagatattgtgcttattccttctgggcaagctcattttgtctcaaatgatgctcagaacaaactaattgattgttccaacattcagtctttttttgatggacaccgcaatgatgccattgagttaggcacaacatcttcggatcatggtttaatttttactgtgcggagccatatcgatatgcatatgggtagccctttactcaatgctttaccatcactgatacatattcatcacgcaatgagctcaactggcccagagtggttacgcgtcggtttatattttgtggcacttgaaacccagcgtattcaaccaggacgagataaaatatttgaccacttgatgagcatcctatttatagaatgtgtccgcgatcatattgcccagcttgatgaccccaaaagctggttaactgcactcatgcatcccgaattatctaatgcgctcgcagctattcatgcttaccccgaaaaaccttggactgtagagagtttggcagatcaatgttgcatgtcacggtctaaatttgccacactttttcaaagtattgttcatgagacccctctcgcttatcttcaacaacatcgccttcgtctggccgtacagttattaaaaaccagtcagttaaatattcagcaaattgccaataaagtcggatactcctcagaaacagcttttagtcaggcatttaaacgtcaatttgaacaatctcctaaacactatcgccagcaatcatgataataa BBa_K1020001_sequence 1 agcgcgttaaaaattcttatttgagcaagagtatagaatgaggttgtagcttatacatgtgattttaggacattgacatggttgaaaatgccaaagactttgacataggttttttggacgataacgactgtttttaatatataagatggatgattatgagcagtatgaatagaggatagaaagaggagaaatactagatggcttcctccgaagacgttatcaaagagttcatgcgtttcaaagttcgtatggaaggttccgttaacggtcacgagttcgaaatcgaaggtgaaggtgaaggtcgtccgtacgaaggtacccagaccgctaaactgaaagttaccaaaggtggtccgctgccgttcgcttgggacatcctgtccccgcagttccagtacggttccaaagcttacgttaaacacccggctgacatcccggactacctgaaactgtccttcccggaaggtttcaaatgggaacgtgttatgaacttcgaagacggtggtgttgttaccgttacccaggactcctccctgcaagacggtgagttcatctacaaagttaaactgcgtggtaccaacttcccgtccgacggtccggttatgcagaaaaaaaccatgggttgggaagcttccaccgaacgtatgtacccggaagacggtgctctgaaaggtgaaatcaaaatgcgtctgaaactgaaagacggtggtcactacgacgctgaagttaaaaccacctacatggctaaaaaaccggttcagctgccgggtgcttacaaaaccgacatcaaactggacatcacctcccacaacgaagactacaccatcgttgaacagtacgaacgtgctgaaggtcgtcactccaccggtgcttaataaactagaccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z