BBa_B0034
1
BBa_B0034
RBS (Elowitz 1999) -- defines RBS efficiency
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
RBS based on Elowitz repressilator.
false
true
_1_
0
24
7
In stock
false
Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS.
Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a>
true
Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003.
annotation23325
1
conserved
range23325
1
5
8
BBa_K1104210
1
BBa_K1104210
B0034+ OxyR
2013-09-10T11:00:00Z
2015-05-08T01:09:09Z
E. coli MG1655 genomic sequence
OxyR([http://parts.igem.org/Part:BBa_K1104200 BBa_K1104200]) is a transcription factor found in bacteria and is activated by oxidative stress. A disulfide bond will form between 2 OxyR transcription factors to activate the transcription. In this form, OxyR induces transcription through binding to TFBS of OxyR-induced promoter. Thus, in the presence of ROS, OxyR activates transcription of the gene regulated by promoters.
false
false
_1415_
0
16313
9
It's complicated
false
.
false
Ting-Yun Chiang
component2338682
1
BBa_K1104200
component2338681
1
BBa_B0034
annotation2338682
1
BBa_K1104200
range2338682
1
19
936
annotation2338681
1
BBa_B0034
range2338681
1
1
12
BBa_K1104200
1
BBa_K1104200
OxyR
2013-09-10T11:00:00Z
2015-05-08T01:09:09Z
E. coli MG1655 genomic sequence
OxyR is a transcription factor found in bacteria and is activated by oxidative stress. A disulfide bond will form between 2 OxyR transcription factors to activate the transcription. In this form, OxyR induces transcription through binding to TFBS of OxyR-induced promoter. Thus, in the presence of ROS, OxyR activates transcription of the gene regulated by promoters.
false
false
_1415_
0
16313
9
In stock
true
.
false
Ting-Yun Chiang
annotation2366903
1
Start
range2366903
1
1
3
annotation2366904
1
Stop
range2366904
1
916
918
annotation2366905
1
OxyR regulator Coding
range2366905
1
1
918
BBa_K1104200_sequence
1
atgaatattcgtgatcttgagtacctggtggcattggctgaacaccgccattttcggcgtgcggcagattcctgccacgttagccagccgacgcttagcgggcaaattcgtaagctggaagatgagctgggcgtgatgttgctggagcggaccagccgtaaagtgttgttcacccaggcgggaatgctgctggtggatcaggcgcgtaccgtgctgcgtgaggtgaaagtccttaaagagatggcaagccagcagggcgagacgatgtccggaccgctgcacattggtttgattcccacagttggaccgtacctgctaccgcatattatccctatgctgcaccagacctttccaaagctggaaatgtatctgcatgaagcacagacccaccagttactggcgcaactggacagcggcaaactcgattgcgtgatcctcgcgctggtgaaagagagcgaagcattcattgaagtgccgttgtttgatgagccaatgttgctggctatctatgaagatcacccgtgggcgaaccgcgaatgcgtaccgatggccgatctggcaggggaaaaactgctgatgctggaagatggtcactgtttgcgcgatcaggcaatgggtttctgttttgaagccggggcggatgaagatacacacttccgcgcgaccagcctggaaactctgcgcaacatggtggcggcaggtagcgggatcactttactgccagcgctggctgtgccgccggagcgcaaacgcgatggggttgtttatctgccgtgcattaagccggaaccacgccgcactattggcctggtttatcgtcctggctcaccgctgcgcagccgctatgagcagctggcagaggccatccgcgcaagaatggatggccatttcgataaagttttaaaacaggcggtttaa
BBa_K1104210_sequence
1
aaagaggagaaatactagatgaatattcgtgatcttgagtacctggtggcattggctgaacaccgccattttcggcgtgcggcagattcctgccacgttagccagccgacgcttagcgggcaaattcgtaagctggaagatgagctgggcgtgatgttgctggagcggaccagccgtaaagtgttgttcacccaggcgggaatgctgctggtggatcaggcgcgtaccgtgctgcgtgaggtgaaagtccttaaagagatggcaagccagcagggcgagacgatgtccggaccgctgcacattggtttgattcccacagttggaccgtacctgctaccgcatattatccctatgctgcaccagacctttccaaagctggaaatgtatctgcatgaagcacagacccaccagttactggcgcaactggacagcggcaaactcgattgcgtgatcctcgcgctggtgaaagagagcgaagcattcattgaagtgccgttgtttgatgagccaatgttgctggctatctatgaagatcacccgtgggcgaaccgcgaatgcgtaccgatggccgatctggcaggggaaaaactgctgatgctggaagatggtcactgtttgcgcgatcaggcaatgggtttctgttttgaagccggggcggatgaagatacacacttccgcgcgaccagcctggaaactctgcgcaacatggtggcggcaggtagcgggatcactttactgccagcgctggctgtgccgccggagcgcaaacgcgatggggttgtttatctgccgtgcattaagccggaaccacgccgcactattggcctggtttatcgtcctggctcaccgctgcgcagccgctatgagcagctggcagaggccatccgcgcaagaatggatggccatttcgataaagttttaaaacaggcggtttaa
BBa_B0034_sequence
1
aaagaggagaaa
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z