BBa_K1112002
1
BBa_K1112002
Cluster PHA
2013-09-09T11:00:00Z
2015-05-08T01:09:11Z
It is a naturally present sequence in Pseudomonas. Allows bioplastic (PHA) synthesis. PHA, or polyhydroxyaalkanoates, is a bioplastic produced in nature by bacterial fermentation of sugar or lipids. In our case it is produced by the fermentation of octanoic acid.
Cluster of pha production in P. putida consists of 4 ORFs that are transcribed in the same direction: phaC1 and phaC2 genes, codify for two PHA sintases; phaZ gene, codifies for a despolimerase; and phaD gene, that codifies for a protein of the TetR family. In the opposite direction two genes that codify for fasinas (phaF and phaI) and structural proteins are found.
false
false
_1423_
0
12039
9
It's complicated
false
PHA, or polyhydroxyaalkanoates, is a bioplastic produced in nature by bacterial fermentation of sugar or lipids. In our case it is produced by the fermentation of octanoic acid.
false
Alba Iglesias Vilches
annotation2366932
1
phaZ gene
range2366932
1
2151
3008
annotation2366934
1
phaC2 gene
range2366934
1
3027
4709
annotation2366930
1
phaC1 gene
range2366930
1
409
2088
annotation2366929
1
PHA promoter
range2366929
1
1
408
annotation2366935
1
PHA synthase 2
range2366935
1
3027
4709
annotation2366933
1
PHA depolymerase
range2366933
1
2151
3008
annotation2366931
1
PHA synthase 1
range2366931
1
409
2088
BBa_K1112002_sequence
1
acagcggcctgttcacctgggaataccttgagcaactgtgcctgcgccaggaacaactgtgggcagaatacctcgatgagttgcaaaaggccggcaaatcccgcgacccagccgaatctgtggtcaagctcatgctctagcgcaaggcctgcggggtttagagcgcattttctaaattcatctgtttgaatgacttgcagacagcccagtgaagggctgtcttgcgcattacacgaaagtcgggtaaccaatgggtgtggcaagttccctgcatgactttgcaggtcggcagaacccacgcagcaccgctgttccttatcactggtcacccgagtagcagtaccgggctcagggctgtgcacccgccacagcaaccggtactcgtctcaggacaacggagcgtcgtatatgagtaacaagaacaacgatgagctacagcggcaggcctcggaaaacaccatggggctgaacccggtcatcggcatccgccgcaaggacctgttgagctcggcacgcaccgtgctgcgccaggccgtgcgccaaccgctgcacagcgccaagcatgtggctcactttggcctggagctgaagaacgtgttgctgggcaaatccagcctggccccggacagcgacgaccgtcgcttcaatgacccggcctggagcaacaacccgctgtaccgccgctacctgcaaacctacctggcctggcgcaaggagctgcaggactgggtgagcagcagcgacctgtccccccaggacatcagccgcggccagttcgtcatcaacctgatgaccgaggccatggcgccgaccaataccctgtccaacccggctgcggtcaaacgcttcttcgaaaccggcggcaagagcctgctcgatggcctgtccaacctggccaaggacatggtcaacaacggcggcatgcccagccaggtgaacatggatgccttcgaagtgggcaagaacctgggcaccagcgaaggcgcggtggtgtaccgcaacgatgtgctggaactgatccagtacagccccatcaccgagcaggtgcatgcccgtccgctgctggtggtgccaccgcagatcaacaagttctacgtgttcgacctcagcccggaaaagagcctggcgcgcttctgcctgcgctcgcagcagcagaccttcatcatcagctggcgcaacccgaccaaggcccagcgtgaatggggcctgtccacctacatcgatgcgctgaaagaagccgtcgacgcggtgctgtcgattaccggcagcaaggacctgaacatgctcggcgcctgctccggtggcatcacttgtaccgcactggtcgggcactatgccgcattgggcgagaacaaggtcaacgccctgaccgtgctggtcagcgtgctggacaccaccatggacaaccaggttgctttgtttgtcgacgagcagaccttggaggccgccaagcgccactcctatcaggcgggcgtgctggaaggcagcgaaatggccaaggtgttcgcctggatgcgccccaacgacctgatctggaactactgggtaaacaactacctgctcggcaatgagccccccgtgttcgacatcctgttctggaacaacgacaccacgcgcctgccggccgccttccacggcgacctgatcgaaatgttcaagagcaacccgctgacccgccccgacgccctgaaagtgtgcggcaccgcgatcgacctgaaacaggtcaaatgcgacatctacagcctcgccggcaccaacgaccacatcaccccctggccgtcatgctaccgctcggcacatctgttcggcggcaagatcgaattcgtactgtccaacagcgggcatatccagagcatcctcaacccgccgggcaacccgaaggcacgtttcatgaccggtgccgatcgcccgggtgacccggtggcctggcaggaaaatgccatcaagcatgcagactcctggtggctgcactggcagagttggctgggcgagcgtgccggcgcgctgaaaaaggcaccgacccgcctgggcaaccgtacctatgccgccggcgaagcctccccaggcacctacgttcacgagcgttgagttacagcgccgtggcggcctgcacggcgccacggtgtttacttcacccaagagtcacgtgcatgccgcaaccctatattttcaggaccgtcgagctggacaaccagtccatccgcaccgctgttcgccccggcaagccgcacctgacgccgttgctgatctttaacggcatcggcgccaacctcgagctggtgttcccgttcatcgatgcacttgacccggacctggaagtcatcgcctttgatgtgcccggggtcggcggctcgtctacgccacgcaacccgtaccgcttccctgggctggccaagctgaccgcgcggatgctcgaaaacctcgactacggccaggtcaacgtcatcggcgtgtcctggggcggcgccctggcccagcagtttgctcacgattaccccgagcgctgcaagaagctggtgctggccgccaccgctgccggtgcggtaatggtgccaggcaagcccaaggtgctgtggatgatggccagcccccggcgttacgtgcagccatcgcatgtcatccgcattgcgccgatgatctatggcggcggcttccgacgtgaccccgacctggccatgcaccatgccgccaaggtgcgctccggcggcaagctgggctactactggcagctgttcgcagggctcggctggaccagcatccactggctgcacaagatccggcagcccaccctggtactggctggcgacgacgacccgttgatcccgctgatcaacatgcgcctgctggcctggcggattcccaatgcccagctacacattatcgacgacggccatctgttcctgatcaccagtgccgaagccgtcgccccgatcatcatgaagttcctgcaggaagaacgtcagcgtgcggtcatgcatccccgtccggcctcggtagagcagcgctgaagacgagggagtgttgccatgacagacaaaccggccaaaggatcgacaacgctccccgccacccgcatgaacgtgcagaacgccatcctcggcctgcgcggccgcgacctgctttccacgctgcgcaacgtcggccgccacggcctgcgccacccgctgcataccgcgcatcatctgctggcgcttggcgggcagttggggcgggtgatgctgggggacacgccctaccagccgaacccgcgtgacgcacgcttcagtgacccgacctggagccagaacccgttctaccgccgcggcctgcaagcctatctggcctggcagaagcagacacgccagtggatcgatgaaagccatttgaacgacgatgatcgagcccgcgcccacttcctgttcaacctgatcaacgatgcgctggcgcccagcaactcactgctcaatccgcaggcggtcaaggggctgttcaacaccggcggccagagcctggtgcgcggcgtggctcacctgctcgacgacctgcgtcacaacgatgggctgcctcgtcaggtggacgagcgcgccttcgaagtgggcgttaacctggccgcaacccctggcgcagtggtatttcgcaacgagctgctggagctgatccagtactcgccgatgagcgaaaagcagcacgcacgcccactgctggtcgtgccgcctcagatcaacaggttctacatcttcgacctcagcgcgaccaacagcttcgtccagtacatgctcaaaagcggcttgcaggtgttcatggtcagctggagcaaccccgacccacgccaccgtgaatggggcctttccagctatgtgcaagccctggaggaagcgctcaatgcctgccgcagtatcagcggcaaccgcgaccccaacctgatgggtgcctgtgccggcggcctgaccatggccgcactgcaaggccatctgcaagccaagaagcaattgcgccgggtgcgcagtgccacgtatctggtcagcttgctggacagcaagttcgaaagcccggccagcctgttcgccgatgagcagaccatcgaagcggccaagcgacgctcctatcagcgtggcgtgctggacggtggtgaagtggcgcggatcttcgcctggatgcggcccaacgacctgatctggaactactgggtaaacaactacctgctcggcaagacaccgcctgcgttcgacatcctgtactggaatgccgacagcacgcgcctgcccgccgcgctgcatggcgacctgctggagtttttcaagctcaaccccttgacctacgcgtccgggctggaggtgtgcggtacgccgatcgacctgcagcaggtcaatatcgacagctttaccgtggccggcagcaacgaccacatcacaccatgggatgcggtgtaccgctcggccttgctgctgggtggcgagcggcgcttcgtgctggccaacagcgggcatatccagagcatcatcaacccgccaggcaaccccaaggcctactacctggccaaccccaagctgagcagcgacccacgcgcctggttccacgacgccaagcgcagtgaaggcagctggtggccgttgtggctggagtggatcaccgcacgctccggcctgctcaaggcaccgcgtactgaactgggcaacgccacttacccactgctaggccccgcgccaggcacctacgtgctgacccgatgagctgctgactggatgaaaacccgcgatcgtatccttgaatgcgccctgcagttgttcaaccagcagggcgaacccaacgtatccaccctggaaattgccaacgaactcggcatcagcccaggcaacctgtactaccacttccatggcaaggagcccttggttctgggcttgttcgagcgttttgaagaagcgttgatgccgttgctggacccaccgctggaggtgcggctggacgcagaggattactggctgttcctgcacctgatcgt
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
James Alastair McLaughlin
Chris J. Myers
2017-03-06T15:00:00.000Z