BBa_K1218004
1
Cse1
CRISPR CasA (Ancestral)
2013-08-27T11:00:00Z
2015-05-08T01:09:42Z
DNA2.0
The E. coli CRISPR system uses the CASCADE complex to target invasive DNA. CasA is the first subunit of the CASCADE complex and is responsible for the initial identification of invasive DNA. The ancestral version of this has been reconstructed using the seed sequences from the PFAM data base by creating a phylogenetic tree using PhyML and then using the WAG method in PAML with Lazarus. This part can be used with casBCDE to create the full CASCADE protein complex.
false
false
_1532_
0
17712
9
It's complicated
false
None
false
Trevor Kalkus, Gordon Wade, Alissa Greenberg
BBa_K1218004_sequence
1
aggaggtaaaacatatggattacaaagacgacgacgataagaatctgattacggacccgtggatcccggttatccgtgatggtcgccgtgcgaaaatcagcctgcgtcagattctggcggccaacgaagtctgggagctgagcgcaccgcgtccggacgtggagctggcgatgttgcaactgctgattgccctgatccaaaccgtttgtccgccacaagacgcggacgaatggcgtgatcgtttcaaaaatccgctgacgcctgatgagctggaagatgcgctggagaagtggcgcgatcgctttgacctggatcacccggagcacccgttcatgcagacgcgcgtcgaagatgagccgaccccggtggatcgcttgctggccgaggttccgggtgcaaataacaaacatttcgactttgttaccgagcgcggtccgggtgagcagtgtccggcgtgcgctgcaatggcgctgtttacgctgcaatcgtttgcgccaagcggtggcctgagaaccagcttgcgtggtggtggccctttgaccacgctggtaccgctgcaaggcgacaccctgtggcaaaccctgtggctgaatgtgctgccacgcgaagatgatgcaccgggtgaccagcgcccgacctgggtgggtccgacgcgcacggcggacaaaaaggcgcgtactattgtgggttatttgcagggcctgttctggcagccgcgtcgtattcgtctgtgcccggatggtggcgccacggaatctagccagttagtccgtggttataagtacggcgcaaactattggccgcatccgctgaccccgtaccgtaagaagaaagaagaagagtggaagcctgttcgcccggacccgggtggcgcgacctggcgtgacctgggtagcctggtcctggacgatgacggtgatggtgcgcgtgctcgtgtggtccgccgcttccgtgacttgcgtgcccgtggcctgcgtctgcgcgtttttggctaccgtaccgatggtcaggcaaaaatcctggagcgtcgtcacgaactgttcagccttccggctgagggccgtccggacctggcggacctggttagcgacctgattgacgcggcagaagatgtcgccgacactctgcgcaaagcagtgaagaaagcattccgtggttacaagggcgatggctccttcatcgacaaacgtttttggcgtcgcaccgaaggtgcctttcacgacctgttggctgatctggatgacgagccggacgagctgcgtcgcgcgtggcgtaaaaccctgcgtcgcctcgcgctgcgtttgttcgatgatcacaaccaccgtcataagcattaatga
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z