BBa_K216005 1 BBa_K216005 PyeaR promoter, responsive to nitrate, nitrite and nitric oxide 2009-09-24T11:00:00Z 2015-05-08T01:11:30Z BioBricked from E. coli K-12 genomic DNA by the Edinburgh 2009 iGEM team. PyeaR promoter. This is the promoter of the Escherichia coli yeaR/yoaG operon (see Lin, H.-Y., Bledsoe, P.J., and Stewart, V. 2007. Activation of yeaR-yoaG operon transcription by the nitrate-responsive regulator NarL is independent of oxygen-responsive regulator Fnr in ''Escherichia coli'' K-12. J. Bacteriol. 189, 7539-7548). Unlike other E. coli promoters responding to nitrate and nitrite, this promoter is not repressed under aerobic conditions. false false _317_ 0 837 163 It's complicated true No special considerations. false Edinburgh iGEM 2009 annotation2027072 1 NarL-binding region range2027072 1 50 65 annotation2027073 1 NsrR-binding region range2027073 1 58 80 annotation2027075 1 promoter -10 region range2027075 1 89 94 annotation2027074 1 promoter -35 region range2027074 1 66 71 BBa_B0030 1 BBa_B0030 RBS.1 (strong) -- modified from R. Weiss 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 Strong RBS based on Ron Weiss thesis. Strength is considered relative to <bb_part>BBa_B0031</bb_part>, <bb_part>BBa_B0032</bb_part>, <bb_part>BBa_B0033</bb_part>. false true _44_46_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix (&quot;orig&quot; in figure 4-14 of Ron Weiss thesis). <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation7025 1 BBa_B0030 range7025 1 1 15 annotation1702 1 RBS range1702 1 8 12 annotation1701 1 RBS-1\Strong range1701 1 1 15 BBa_K1523101 1 BBa_K1523101 PyeaR->Riboflavin synthase 2014-09-10T11:00:00Z 2015-05-08T01:10:50Z By registry It can sense p-nitrophenol by Pyear.When PNP exits,it can produce electry in MFC false false _1905_ 0 21246 9 It's complicated true Nothing false Haotian Wang component2382888 1 BBa_K216005 component2382890 1 BBa_B0030 component2382907 1 BBa_K1172303 annotation2382907 1 BBa_K1172303 range2382907 1 130 3726 annotation2382888 1 BBa_K216005 range2382888 1 1 100 annotation2382890 1 BBa_B0030 range2382890 1 109 123 BBa_K1172303 1 rib-synth Riboflavin synthesis gene cluster from shewanella oneidensis 2013-09-18T11:00:00Z 2015-05-08T01:09:34Z genome of shewanella oneidensis MR-1 This gene cluster consists of four different genes that form a single operon. false false _1485_ 0 17241 9 In stock true we eliminated three illegal restriction sites. false Thorben Meyer annotation2370721 1 tga range2370721 1 1144 1146 annotation2370313 1 ribE range2370313 1 3121 3597 annotation2370724 1 taa range2370724 1 3595 3597 annotation2370310 1 ribD range2370310 1 1 1146 annotation2370715 1 Pst1 C->T range2370715 1 1644 1649 annotation2370723 1 taa range2370723 1 2978 2980 annotation2370718 1 atg range2370718 1 1154 1156 annotation2370719 1 atg range2370719 1 1877 1879 annotation2370714 1 Pst1 C->T range2370714 1 234 239 annotation2370311 1 SO_3468 range2370311 1 1154 1810 annotation2370716 1 EcoR1 C->T range2370716 1 1840 1845 annotation2370312 1 ribBA range2370312 1 1877 2980 annotation2370717 1 atg range2370717 1 1 3 annotation2370720 1 atg range2370720 1 3121 3123 annotation2370722 1 tag range2370722 1 1808 1810 BBa_K1172303_sequence 1 atgaattggtcagtactcgataaccaaatgatgagccgagctattcaattggctcgcaaaggattttataccactcgccccaatcccagtgtgggctgcgttatcgttaacgataaccagattgtcggtgaaggttatcatcaaaaagccggagagccccacgctgaagtgcatgcgctgcgcatggctggcgagcttgcccgtggcgcgactgcttatgtcaccttagaaccctgtagccattatggtcgtacgccgccctgcgccttggcgctgatcaatattggtgtaaagcgggtggtggtggcggttgaagatcctaatccgcaggtcggcgggcgcggtattcaaatgctgcgcgatgcgggtattcaagtggatgtgggcttgcatcgtgatgaggcctatgccttaaatcttggttttatgaagcgcatggagtcgggtctaccttgggtgacggtaaagcttgccgcgagtcttgatggtaaaactgcgttatcaaacggggtgtctaaatggatcactggccctgaagctcgccgcgatgtgcagcgcttaagattacgatcctgcgcgctgatcacggggattgaaacggtactggccgatgatccatcgctcaatgtgcgctactcagagcttggcagtttaagagcgcaattgagtgagtcgcaggttttacagccgctgcgagtggttttggacagtcgcgcccgcatgcctatcacggcagcattgtttgcgattgaatcacccattttattagtctcgacagtgagctattcgtcagactttatggtgcaattacccgcccatgtgacttgcctccaattaccagccattgagggtcgaatctccttgtctgcactattaagctatttaggcaaaagctgtaatcaggtgcttatcgaagcgggcgcgactttagctggcgcctttatcggctcaggattagccgatgaattagtgctttatcaagcgatgaaaatccttggcggccaaggacgtaatctacttgaattacccgattatcaaatgatggccgatattccgaccctcaaattggtcgacgagcgtaaagtgggcgcggatacgcgcttcaccttgaggctcgagtccaatccatctttagcgaataagtgagttaaccatgtttactgggattattgaggccgttggtacactgcgaaagcttgagcgtaaaggcgatgatattcgcttaacggtcgccagtggcaaactggatttaaccgatgtgcgtttaggcgacagtatcgccaccaacggtgtatgtttgaccgtggttcaacagttagccgatggctatgtggctgatgtgtcagctgaaaccgtcagccttacaggttttgcaaactataaagtgggtactaaggtcaatcttgaaaaggccgtcaccccaactactcgtttaggcggccatatggtgagtggtcatgtggatgggattgctactgttgagcagcgtcttgctcgtggtcaagcaatcgaattttggttagcggctcccacggagcttgctcgctatattgcccataaaggttctatcacgattgatggcgtgagcctgacagtaaacgaagtcgatggacaccgttttcgattaacgattgtgccccatactgtaggtgaaaccacgttggtggatttaaaagcaggcgataaggtcaatattgaagtggacttaattgcccgttatttagagcgtttaatgcgttttgacagcaaagaaacccaaggcggaggggtgaccatggaaatgttagcccgtgctggctttgtgcgttagtacactggcactcagttcacttaggtatagaatttataacaacagtcacattataaaggtcctacaatggcgctgcacagtatagaagagatcatcgaggatattcgtcaaggcaaaatggttattttgatggatgacgaggacagagaaaacgaaggcgatctgattttggcggccgaaatggtgacgccagaagcgattaactttatggcgaaatacggccgcgggttaatctgccaaacgatgaccaaggcccgttgccagcagttaaatctgcccttgatggtaaccaataacaatgcgcagttctcgaccaactttacggtatcgattgaagctgccgaaggcgtaaccacagggatttcggcccacgatcgcgctgtaaccgttaaagcggccgtagcaaaagatgctaaagcgtcggacttagttcagcctgggcatatcttcccgttaatggcgcaggatggtggcgtattaacccgcgcaggtcacactgaagcgggctgtgatttagcccgtttagcagggcttgaaccatcgggggtgattgttgaaattttgaacgaagacggcactatggcccgtcgcccagatttagagattttctctgaaaaacatggcattaaaatcggcactattgcggccctgattgaataccgtaataccaaagaaacgaccgttgtgcgtgaagccaaatgcaaactgccaacccgtttcggtgagttcgatatggtgacctttagggatactatcgacaatcaattgcactttgccttagtgaaaggcgaggtgaagcctgactgtttagtacgggtacatttacagaatacctttaacgatctacttcactctgagcgtgatcagcaacgtagctggccgctcgaaaaagcgatggcgcggatttctgccgaaggtggtgtattagtactgcttggcaatcaggaacattccagtgaaatcctcgccaaagtcaaagcctttgaagcggaagatcaaggtcagaccccagtatcggctaaatggcaaggcacctcacgccgtgtaggtgtgggttcgcaaatcctcgccagtttaggcgtgacaaaaatgcgactcttaagctcgcccaaacgttatcactcactttcaggctttggccttgaagtgaccgaatgcgtagctgagtaacaggttaagcttgtaataggttgcactaaggtaaaattaaccatttctatcatttgcataaggccgcgggcaattgactgtggtatcatgtcgccacttttcgcccagagctgggtgctttagctaaattaggtaagaaaatgaacgtagttcaaggtaatatcgaagcgaagaatgccaaagttgcgattgtaatttcgcgttttaacagctttttagtcgaaagcctgcttgaaggtgcacttgacacgctgaaacgttttggccaagtcagtgatgaaaacatcactgttgtccgtgtacctggtgcggttgagttaccgctggctgcacgtcgtgttgccgcaagtggtaagtttgacggtattattgcacttggtgcggtaatccgtggtggtacccctcactttgattttgttgcaggcgaatgtaacaaaggtctggctcaaattgcattagagttcgatctgcccgttgctttcggtgtattgactacagataccattgaacaagctattgagcgttcaggtactaaagcgggtaacaaaggcggcgaagctgctctaagcttgcttgaaatggtcaacgttctgcaacagcttgaacaacagttgtaa BBa_K1523101_sequence 1 ttcccatctataatcctccctgattcttcgctgatatggtgctaaaaagtaaccaataaatggtatttaaaatgcaaattatcaggcgtaccctgaaacgtactagagattaaagaggagaaatactagatgaattggtcagtactcgataaccaaatgatgagccgagctattcaattggctcgcaaaggattttataccactcgccccaatcccagtgtgggctgcgttatcgttaacgataaccagattgtcggtgaaggttatcatcaaaaagccggagagccccacgctgaagtgcatgcgctgcgcatggctggcgagcttgcccgtggcgcgactgcttatgtcaccttagaaccctgtagccattatggtcgtacgccgccctgcgccttggcgctgatcaatattggtgtaaagcgggtggtggtggcggttgaagatcctaatccgcaggtcggcgggcgcggtattcaaatgctgcgcgatgcgggtattcaagtggatgtgggcttgcatcgtgatgaggcctatgccttaaatcttggttttatgaagcgcatggagtcgggtctaccttgggtgacggtaaagcttgccgcgagtcttgatggtaaaactgcgttatcaaacggggtgtctaaatggatcactggccctgaagctcgccgcgatgtgcagcgcttaagattacgatcctgcgcgctgatcacggggattgaaacggtactggccgatgatccatcgctcaatgtgcgctactcagagcttggcagtttaagagcgcaattgagtgagtcgcaggttttacagccgctgcgagtggttttggacagtcgcgcccgcatgcctatcacggcagcattgtttgcgattgaatcacccattttattagtctcgacagtgagctattcgtcagactttatggtgcaattacccgcccatgtgacttgcctccaattaccagccattgagggtcgaatctccttgtctgcactattaagctatttaggcaaaagctgtaatcaggtgcttatcgaagcgggcgcgactttagctggcgcctttatcggctcaggattagccgatgaattagtgctttatcaagcgatgaaaatccttggcggccaaggacgtaatctacttgaattacccgattatcaaatgatggccgatattccgaccctcaaattggtcgacgagcgtaaagtgggcgcggatacgcgcttcaccttgaggctcgagtccaatccatctttagcgaataagtgagttaaccatgtttactgggattattgaggccgttggtacactgcgaaagcttgagcgtaaaggcgatgatattcgcttaacggtcgccagtggcaaactggatttaaccgatgtgcgtttaggcgacagtatcgccaccaacggtgtatgtttgaccgtggttcaacagttagccgatggctatgtggctgatgtgtcagctgaaaccgtcagccttacaggttttgcaaactataaagtgggtactaaggtcaatcttgaaaaggccgtcaccccaactactcgtttaggcggccatatggtgagtggtcatgtggatgggattgctactgttgagcagcgtcttgctcgtggtcaagcaatcgaattttggttagcggctcccacggagcttgctcgctatattgcccataaaggttctatcacgattgatggcgtgagcctgacagtaaacgaagtcgatggacaccgttttcgattaacgattgtgccccatactgtaggtgaaaccacgttggtggatttaaaagcaggcgataaggtcaatattgaagtggacttaattgcccgttatttagagcgtttaatgcgttttgacagcaaagaaacccaaggcggaggggtgaccatggaaatgttagcccgtgctggctttgtgcgttagtacactggcactcagttcacttaggtatagaatttataacaacagtcacattataaaggtcctacaatggcgctgcacagtatagaagagatcatcgaggatattcgtcaaggcaaaatggttattttgatggatgacgaggacagagaaaacgaaggcgatctgattttggcggccgaaatggtgacgccagaagcgattaactttatggcgaaatacggccgcgggttaatctgccaaacgatgaccaaggcccgttgccagcagttaaatctgcccttgatggtaaccaataacaatgcgcagttctcgaccaactttacggtatcgattgaagctgccgaaggcgtaaccacagggatttcggcccacgatcgcgctgtaaccgttaaagcggccgtagcaaaagatgctaaagcgtcggacttagttcagcctgggcatatcttcccgttaatggcgcaggatggtggcgtattaacccgcgcaggtcacactgaagcgggctgtgatttagcccgtttagcagggcttgaaccatcgggggtgattgttgaaattttgaacgaagacggcactatggcccgtcgcccagatttagagattttctctgaaaaacatggcattaaaatcggcactattgcggccctgattgaataccgtaataccaaagaaacgaccgttgtgcgtgaagccaaatgcaaactgccaacccgtttcggtgagttcgatatggtgacctttagggatactatcgacaatcaattgcactttgccttagtgaaaggcgaggtgaagcctgactgtttagtacgggtacatttacagaatacctttaacgatctacttcactctgagcgtgatcagcaacgtagctggccgctcgaaaaagcgatggcgcggatttctgccgaaggtggtgtattagtactgcttggcaatcaggaacattccagtgaaatcctcgccaaagtcaaagcctttgaagcggaagatcaaggtcagaccccagtatcggctaaatggcaaggcacctcacgccgtgtaggtgtgggttcgcaaatcctcgccagtttaggcgtgacaaaaatgcgactcttaagctcgcccaaacgttatcactcactttcaggctttggccttgaagtgaccgaatgcgtagctgagtaacaggttaagcttgtaataggttgcactaaggtaaaattaaccatttctatcatttgcataaggccgcgggcaattgactgtggtatcatgtcgccacttttcgcccagagctgggtgctttagctaaattaggtaagaaaatgaacgtagttcaaggtaatatcgaagcgaagaatgccaaagttgcgattgtaatttcgcgttttaacagctttttagtcgaaagcctgcttgaaggtgcacttgacacgctgaaacgttttggccaagtcagtgatgaaaacatcactgttgtccgtgtacctggtgcggttgagttaccgctggctgcacgtcgtgttgccgcaagtggtaagtttgacggtattattgcacttggtgcggtaatccgtggtggtacccctcactttgattttgttgcaggcgaatgtaacaaaggtctggctcaaattgcattagagttcgatctgcccgttgctttcggtgtattgactacagataccattgaacaagctattgagcgttcaggtactaaagcgggtaacaaaggcggcgaagctgctctaagcttgcttgaaatggtcaacgttctgcaacagcttgaacaacagttgtaa BBa_B0030_sequence 1 attaaagaggagaaa BBa_K216005_sequence 1 ttcccatctataatcctccctgattcttcgctgatatggtgctaaaaagtaaccaataaatggtatttaaaatgcaaattatcaggcgtaccctgaaacg igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 Chris J. Myers James Alastair McLaughlin 2017-03-06T15:00:00.000Z