BBa_K1585213
1
BBa_K1585213
B0034.XPK
2015-08-24T11:00:00Z
2015-08-28T08:37:34Z
Bifidobacterium adolescentis
This is the translational unit for the phosphoketolase (XPK). It derives from Bifidobacterium adolescentis and is codon optimized for E. coli.
false
false
_2002_
19522
24505
9
false
RFC10 compatible
false
Laura Grabowski
component2439486
1
BBa_B0034
component2439488
1
BBa_K1585203
annotation2439488
1
BBa_K1585203
range2439488
1
19
2499
annotation2439486
1
BBa_B0034
range2439486
1
1
12
BBa_K1585203
1
BBa_K1585203
XPK
2015-08-24T11:00:00Z
2015-08-28T08:33:31Z
Bifidobacterium adolescentis
phosphoketolase from Bifidobacterium adolescentis, codon optimized for E.coli, converts Xu5p and pi to actp and g3p
false
false
_2002_
19522
24470
9
false
codon optimized for E.coli
false
Carolin Gr??tering
annotation2439475
1
phosphoketolase
range2439475
1
1
2481
BBa_B0034
1
BBa_B0034
RBS (Elowitz 1999) -- defines RBS efficiency
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
RBS based on Elowitz repressilator.
false
true
_1_
0
24
7
In stock
false
Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS.
Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a>
true
Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003.
annotation23325
1
conserved
range23325
1
5
8
BBa_B0034_sequence
1
aaagaggagaaa
BBa_K1585213_sequence
1
aaagaggagaaatactagatgaccagcccggtgattggcaccccgtggaaaaaactgaacgcgccggtgagcgaagaagcgattgaaggcgtggataaatattggcgcgcggcgaactatctgagcattggccagatttatctgcgtagcaacccgctgatgaaagaaccgtttacccgcgaagatgtgaaacatcgcctggtgggccattggggcaccaccccgggcctgaactttctgattggccatattaaccgcctgattgcggatcatcagcagaacaccgtgattattatgggcccgggccatggcggcccggcgggcaccgcgcagagctatctggatggcacctataccgaatattttccgaacattaccaaagatgaagcgggcctgcaaaaattttttcgccagtttagctatccgggcggcattccgagccattatgcgccggaaaccccgggcagcattcatgaaggcggcgaactgggctatgcgctgagccatgcgtatggcgcggtgatgaacaacccgagcctgtttgttccggcgattgtgggcgatggcgaagcggaaaccggcccgctggcgaccggctggcagagcaacaaactgattaacccgcgcaccgatggcattgtgctgccgattctgcatctgaacggctataaaattgcgaacccgaccattctgagccgcattagcgatgaagaactgcatgaattttttcatggcatgggctatgaaccgtatgaatttgtggcgggctttgataacgaagatcatctgagcattcatcgccgctttgcggaactgtttgaaaccgtgtttgatgaaatttgcgatattaaagcggcggcgcagaccgatgatatgacccgcccgttttatccgatgattatttttcgcaccccgaaaggctggacctgcccgaaatttattgatggcaaaaaaaccgaaggtagctggcgcagccatcaggtgccgctggcgagcgcgcgcgataccgaagcgcattttgaagtgctgaaaaactggctggaaagctataaaccggaagaactgtttgatgaaaacggcgcggtgaaaccggaagtgaccgcgtttatgccgaccggcgaactgcgtattggcgaaaacccgaacgcgaacggtggtcgtattcgcgaagaactgaaactgccgaaactggaagattatgaagttaaagaagtggccgagtatggtcatggttggggtcaactggaagcgacccgccgcctgggcgtttatacccgcgatattattaaaaacaacccggattctttccgcatcttcggtccggatgaaaccgcctctaaccgcctgcaagcggcctatgatgtgaccaacaaacagtgggatgcgggttatctgtctgcccaggttgatgaacatatggcggtgaccggtcaggttaccgaacaactgagcgaacatcagatggaaggctttctggaaggctatctgctgaccggccgccatggcatctggtctagctatgaaagcttcgtgcatgttatcgattctatgctgaaccagcatgccaaatggctggaagcgaccgttcgcgaaattccgtggcgcaaaccgatctctagcatgaacctgctggttagcagccatgtgtggcgccaggatcataacggctttagccatcaggacccgggcgttaccagcgtgctgctgaacaaatgcttcaataacgaccatgtgatcggcatttattttccggtggatagcaacatgctgctggccgttgcggaaaaatgctataaaagcaccaacaaaattaacgccattattgcgggcaaacaaccggccgcgacctggctgaccctggacgaagcccgcgcggaactggaaaaaggcgccgcggaatggaaatgggcgagcaacgtgaaaagcaacgatgaagcgcagattgtgctggcggcgaccggcgatgtgccgacccaggaaattatggcggcggcggataaactggatgcgatgggcattaaatttaaagtggtgaacgtggtggatctggtgaaactgcaaagcgcgaaagaaaacaacgaagcgctgagcgatgaagaatttgcggaactgtttaccgaagataaaccagtgctgtttgcgtatcatagctatgcgcgcgatgtgcgcggcctgatttatgatcgcccgaaccatgataactttaacgtgcatggctatgaagaacagggcagcaccaccaccccgtatgatatggtgcgcgtgaacaacattgatcgctatgaactgcaagccgaagccctgcgtatgattgatgccgataaatacgccgataagatcaacgaactggaagccttccgccaggaagcgttccagttcgccgttgataacggctatgatcatccggattataccgattgggtgtatagcggcgttaacaccaataagcagggcgcgattagcgccaccgcggcgaccgcgggcgacaacgaataataa
BBa_K1585203_sequence
1
atgaccagcccggtgattggcaccccgtggaaaaaactgaacgcgccggtgagcgaagaagcgattgaaggcgtggataaatattggcgcgcggcgaactatctgagcattggccagatttatctgcgtagcaacccgctgatgaaagaaccgtttacccgcgaagatgtgaaacatcgcctggtgggccattggggcaccaccccgggcctgaactttctgattggccatattaaccgcctgattgcggatcatcagcagaacaccgtgattattatgggcccgggccatggcggcccggcgggcaccgcgcagagctatctggatggcacctataccgaatattttccgaacattaccaaagatgaagcgggcctgcaaaaattttttcgccagtttagctatccgggcggcattccgagccattatgcgccggaaaccccgggcagcattcatgaaggcggcgaactgggctatgcgctgagccatgcgtatggcgcggtgatgaacaacccgagcctgtttgttccggcgattgtgggcgatggcgaagcggaaaccggcccgctggcgaccggctggcagagcaacaaactgattaacccgcgcaccgatggcattgtgctgccgattctgcatctgaacggctataaaattgcgaacccgaccattctgagccgcattagcgatgaagaactgcatgaattttttcatggcatgggctatgaaccgtatgaatttgtggcgggctttgataacgaagatcatctgagcattcatcgccgctttgcggaactgtttgaaaccgtgtttgatgaaatttgcgatattaaagcggcggcgcagaccgatgatatgacccgcccgttttatccgatgattatttttcgcaccccgaaaggctggacctgcccgaaatttattgatggcaaaaaaaccgaaggtagctggcgcagccatcaggtgccgctggcgagcgcgcgcgataccgaagcgcattttgaagtgctgaaaaactggctggaaagctataaaccggaagaactgtttgatgaaaacggcgcggtgaaaccggaagtgaccgcgtttatgccgaccggcgaactgcgtattggcgaaaacccgaacgcgaacggtggtcgtattcgcgaagaactgaaactgccgaaactggaagattatgaagttaaagaagtggccgagtatggtcatggttggggtcaactggaagcgacccgccgcctgggcgtttatacccgcgatattattaaaaacaacccggattctttccgcatcttcggtccggatgaaaccgcctctaaccgcctgcaagcggcctatgatgtgaccaacaaacagtgggatgcgggttatctgtctgcccaggttgatgaacatatggcggtgaccggtcaggttaccgaacaactgagcgaacatcagatggaaggctttctggaaggctatctgctgaccggccgccatggcatctggtctagctatgaaagcttcgtgcatgttatcgattctatgctgaaccagcatgccaaatggctggaagcgaccgttcgcgaaattccgtggcgcaaaccgatctctagcatgaacctgctggttagcagccatgtgtggcgccaggatcataacggctttagccatcaggacccgggcgttaccagcgtgctgctgaacaaatgcttcaataacgaccatgtgatcggcatttattttccggtggatagcaacatgctgctggccgttgcggaaaaatgctataaaagcaccaacaaaattaacgccattattgcgggcaaacaaccggccgcgacctggctgaccctggacgaagcccgcgcggaactggaaaaaggcgccgcggaatggaaatgggcgagcaacgtgaaaagcaacgatgaagcgcagattgtgctggcggcgaccggcgatgtgccgacccaggaaattatggcggcggcggataaactggatgcgatgggcattaaatttaaagtggtgaacgtggtggatctggtgaaactgcaaagcgcgaaagaaaacaacgaagcgctgagcgatgaagaatttgcggaactgtttaccgaagataaaccagtgctgtttgcgtatcatagctatgcgcgcgatgtgcgcggcctgatttatgatcgcccgaaccatgataactttaacgtgcatggctatgaagaacagggcagcaccaccaccccgtatgatatggtgcgcgtgaacaacattgatcgctatgaactgcaagccgaagccctgcgtatgattgatgccgataaatacgccgataagatcaacgaactggaagccttccgccaggaagcgttccagttcgccgttgataacggctatgatcatccggattataccgattgggtgtatagcggcgttaacaccaataagcagggcgcgattagcgccaccgcggcgaccgcgggcgacaacgaataataa
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z