BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_K1658000 1 CAD1en Cinnamyl alcohol dehydrogenase CAD1 2015-09-14T11:00:00Z 2015-09-18T04:48:19Z Gene name: CAD1, Length: 1315 bp, Vector name: pUC57, Sequence: GAATTCGCGGCCGCTTCTAGAGTTGACGGCTAGCTCAGTC CTAGGTACAGTGCTAGCTACTAGAGAAAGAGGAGAAATACTAGAT GGGCTCGCTGGAAGTGGAACGTAAAACCGTGGGCTGGGCTGCTCG TGACCCGTCTGGCGTGCTGTCCCCGTATGAATACACCCTGCGTAA CACCGGCCCGCAGGATGTGTATGTTGAAGTCATGTGCTGTGGTAT TTGTCATACGGATGTTCACCAAATCAAAAACGACCTGGGCATGAG TAATTACCCGATGGTGCCGGGCCATGAAGTGGTTGGTGAAGTCGT GGAAGTGGGCTCCGAAGTTACCAAATTTCGTGCCGGTGATGTTGT CGGCGTCGGTTGTATTGTGGGCTCATGCGGTAACTGTCGCCCGTG CAATTCGGATATTGAACAGTACTGCAACAAGAAAATTTGGAGTTA CAACGATGTTTATCCGGATGGTAAACCGACCCAGGGCGGTTTTGC AGGTGCTATGGTGGTTGATCAAAAATTCGTCGTGAAAATTCCGGA TGGTATGGCCCCGGAACAGGCCGCCCCGCTGCTGTGCGCCGGTGT GACGGTTTACAGCCCGCTGAATCATTTCGGCCTGAAACAATCTGG TCTGCGCGGCGGTATCCTGGGTCTGGGCGGTGTTGGTCACATGGG TGTGAAAATTGCGAAAGCGATGGGCCATCACGTCACCGTGATCAG CTCTAGTGATAAAAAACGTGCAGAAGCTCTGGACCATCTGGGCGC GGATGACTATCTGGTTTCCTCAGATGCAGCTCGCATGCAGGAAGC GGCCGATTCTCTGGACTATATTATCGACACGGTTCCGGTCTTTCA CCCGCTGGAACCGTACCTGAGCCTGCTGAAAATTGATGGCAAACT GATCCTGATGGGTGTTGTCAACACCCCGCTGCAATTCGTTAGCCC GATGGTCATGCTGGGTCGTAAATCTATTACGGGCAGTTTTATCGG TTCCATGAAAGAACTGGCAGAAATGCTGGAATTTTGTAAAGAAAA AGACCTGAGCAGCACCATCGAAATCGTGAAAATGGACTACATCAA CACGGCTTTTGAACGCCTGGAAAAAAATGACGTGCGTTATCGCTT CGTGGTGGATGTCGCGGGTAGCAAACTGTATCAATGATACTAGAG CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCTACTAGAGTC ACACTGGCTCACCTTCGGGTGGGCCTTTCTGCGTTTATATACTAG TAGCGGCCGCTGCAG, Cinnamyl alcohol dehydrogenase (CAD, EC 1.1.1.195) is an NADP(H) specific oxidoreductase catalysing the reversible conversion of cinnamyl aldehydes to the corresponding alcohols or monolignols (Mansel et al., 1974; Wyrambik and Griesebach, 1975; Boudet et al., 1995). Polymerization of the three monolignols: /?-coumaryl, sinapyl and coniferyl alcohols lead to lignin. The enzyme is closely related to lignification, and chemical inhibition of its activity reduces the synthesis of lignins (Moesbacher et al., 1990; Mauch-Mani and Slusarenko, 1996). false false _2076_ 16902 16902 9 Not in stock true . false &#350;eniz Y??ksel, Burak K&#305;z&#305;l component2471000 1 BBa_J23100 component2471004 1 BBa_B0010 component2471002 1 BBa_B0034 component2471003 1 BBa_K1658006 annotation2471002 1 BBa_B0034 range2471002 1 44 55 annotation2471003 1 BBa_K1658006 range2471003 1 62 1143 annotation2471000 1 BBa_J23100 range2471000 1 1 35 annotation2471004 1 BBa_B0010 range2471004 1 1152 1231 BBa_J23100 1 BBa_J23100 constitutive promoter family member 2006-08-03T11:00:00Z 2015-08-31T04:08:40Z Isolated from library of promoters Released HQ 2013 Replace later false true _52_ 0 483 95 In stock true N/A true John Anderson BBa_B0010 1 BBa_B0010 T1 from E. coli rrnB 2003-11-19T12:00:00Z 2015-08-31T04:07:20Z Transcriptional terminator consisting of a 64 bp stem-loop. false false _1_ 0 24 7 In stock false true Randy Rettberg annotation7018 1 BBa_B0010 range7018 1 1 80 annotation4184 1 stem_loop range4184 1 12 55 BBa_K1658006 1 BBa_K1658006 CAD1 Enzyme 2015-09-14T11:00:00Z 2015-09-18T04:31:31Z Ocimum basilicum is sweet basil (Eukaryota, Viridiplantae, Streptophyta, Embryophyta, Tracheophyta, Spermatophyta, Magnoliophyta, eudicotyledons, Gunneridae, Pentapetalae, asterids, lamiids, Lamiales, Lamiaceae,Nepetoideae, Ocimeae, Ocimum) AY879285.1 Cinnamyl alcohol dehydrogenase (CAD, EC 1.1.1.195) is an NADP(H) specific oxidoreductase catalysing the reversible conversion of cinnamyl aldehydes to the corresponding alcohols or monolignols (Mansel et al., 1974; Wyrambik and Griesebach, 1975; Boudet et al., 1995). Polymerization of the three monolignols: /?-coumaryl, sinapyl and coniferyl alcohols lead to lignin. The enzyme is closely related to lignification, and chemical inhibition of its activity reduces the synthesis of lignins (Moesbacher et al., 1990; Mauch-Mani and Slusarenko, 1996). Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols false false _2076_ 16902 16902 9 false Gene name: CAD1 Length: 1315 bp Vector name: pUC57 Sequence: GAATTCGCGGCCGCTTCTAGAGTTGACGGCTAGCTCAGTC CTAGGTACAGTGCTAGCTACTAGAGAAAGAGGAGAAATACTAGAT GGGCTCGCTGGAAGTGGAACGTAAAACCGTGGGCTGGGCTGCTCG TGACCCGTCTGGCGTGCTGTCCCCGTATGAATACACCCTGCGTAA CACCGGCCCGCAGGATGTGTATGTTGAAGTCATGTGCTGTGGTAT TTGTCATACGGATGTTCACCAAATCAAAAACGACCTGGGCATGAG TAATTACCCGATGGTGCCGGGCCATGAAGTGGTTGGTGAAGTCGT GGAAGTGGGCTCCGAAGTTACCAAATTTCGTGCCGGTGATGTTGT CGGCGTCGGTTGTATTGTGGGCTCATGCGGTAACTGTCGCCCGTG CAATTCGGATATTGAACAGTACTGCAACAAGAAAATTTGGAGTTA CAACGATGTTTATCCGGATGGTAAACCGACCCAGGGCGGTTTTGC AGGTGCTATGGTGGTTGATCAAAAATTCGTCGTGAAAATTCCGGA TGGTATGGCCCCGGAACAGGCCGCCCCGCTGCTGTGCGCCGGTGT GACGGTTTACAGCCCGCTGAATCATTTCGGCCTGAAACAATCTGG TCTGCGCGGCGGTATCCTGGGTCTGGGCGGTGTTGGTCACATGGG TGTGAAAATTGCGAAAGCGATGGGCCATCACGTCACCGTGATCAG CTCTAGTGATAAAAAACGTGCAGAAGCTCTGGACCATCTGGGCGC GGATGACTATCTGGTTTCCTCAGATGCAGCTCGCATGCAGGAAGC GGCCGATTCTCTGGACTATATTATCGACACGGTTCCGGTCTTTCA CCCGCTGGAACCGTACCTGAGCCTGCTGAAAATTGATGGCAAACT GATCCTGATGGGTGTTGTCAACACCCCGCTGCAATTCGTTAGCCC GATGGTCATGCTGGGTCGTAAATCTATTACGGGCAGTTTTATCGG TTCCATGAAAGAACTGGCAGAAATGCTGGAATTTTGTAAAGAAAA AGACCTGAGCAGCACCATCGAAATCGTGAAAATGGACTACATCAA CACGGCTTTTGAACGCCTGGAAAAAAATGACGTGCGTTATCGCTT CGTGGTGGATGTCGCGGGTAGCAAACTGTATCAATGATACTAGAG CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCTACTAGAGTC ACACTGGCTCACCTTCGGGTGGGCCTTTCTGCGTTTATATACTAG TAGCGGCCGCTGCAG false &#350;eniz Y??ksel BBa_B0010_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc BBa_J23100_sequence 1 ttgacggctagctcagtcctaggtacagtgctagc BBa_B0034_sequence 1 aaagaggagaaa BBa_K1658006_sequence 1 atgggctcgctggaagtggaacgtaaaaccgtgggctgggctgctcgtgacccgtctggcgtgctgtccccgtatgaatacaccctgcgtaacaccggcccgcaggatgtgtatgttgaagtcatgtgctgtggtatttgtcatacggatgttcaccaaatcaaaaacgacctgggcatgagtaattacccgatggtgccgggccatgaagtggttggtgaagtcgtggaagtgggctccgaagttaccaaatttcgtgccggtgatgttgtcggcgtcggttgtattgtgggctcatgcggtaactgtcgcccgtgcaattcggatattgaacagtactgcaacaagaaaatttggagttacaacgatgtttatccggatggtaaaccgacccagggcggttttgcaggtgctatggtggttgatcaaaaattcgtcgtgaaaattccggatggtatggccccggaacaggccgccccgctgctgtgcgccggtgtgacggtttacagcccgctgaatcatttcggcctgaaacaatctggtctgcgcggcggtatcctgggtctgggcggtgttggtcacatgggtgtgaaaattgcgaaagcgatgggccatcacgtcaccgtgatcagctctagtgataaaaaacgtgcagaagctctggaccatctgggcgcggatgactatctggtttcctcagatgcagctcgcatgcaggaagcggccgattctctggactatattatcgacacggttccggtctttcacccgctggaaccgtacctgagcctgctgaaaattgatggcaaactgatcctgatgggtgttgtcaacaccccgctgcaattcgttagcccgatggtcatgctgggtcgtaaatctattacgggcagttttatcggttccatgaaagaactggcagaaatgctggaattttgtaaagaaaaagacctgagcagcaccatcgaaatcgtgaaaatggactacatcaacacggcttttgaacgcctggaaaaaaatgacgtgcgttatcgcttcgtggtggatgtcgcgggtagcaaactgtatcaatgatactagag BBa_K1658000_sequence 1 ttgacggctagctcagtcctaggtacagtgctagctactagagaaagaggagaaatactagatgggctcgctggaagtggaacgtaaaaccgtgggctgggctgctcgtgacccgtctggcgtgctgtccccgtatgaatacaccctgcgtaacaccggcccgcaggatgtgtatgttgaagtcatgtgctgtggtatttgtcatacggatgttcaccaaatcaaaaacgacctgggcatgagtaattacccgatggtgccgggccatgaagtggttggtgaagtcgtggaagtgggctccgaagttaccaaatttcgtgccggtgatgttgtcggcgtcggttgtattgtgggctcatgcggtaactgtcgcccgtgcaattcggatattgaacagtactgcaacaagaaaatttggagttacaacgatgtttatccggatggtaaaccgacccagggcggttttgcaggtgctatggtggttgatcaaaaattcgtcgtgaaaattccggatggtatggccccggaacaggccgccccgctgctgtgcgccggtgtgacggtttacagcccgctgaatcatttcggcctgaaacaatctggtctgcgcggcggtatcctgggtctgggcggtgttggtcacatgggtgtgaaaattgcgaaagcgatgggccatcacgtcaccgtgatcagctctagtgataaaaaacgtgcagaagctctggaccatctgggcgcggatgactatctggtttcctcagatgcagctcgcatgcaggaagcggccgattctctggactatattatcgacacggttccggtctttcacccgctggaaccgtacctgagcctgctgaaaattgatggcaaactgatcctgatgggtgttgtcaacaccccgctgcaattcgttagcccgatggtcatgctgggtcgtaaatctattacgggcagttttatcggttccatgaaagaactggcagaaatgctggaattttgtaaagaaaaagacctgagcagcaccatcgaaatcgtgaaaatggactacatcaacacggcttttgaacgcctggaaaaaaatgacgtgcgttatcgcttcgtggtggatgtcgcgggtagcaaactgtatcaatgatactagagtactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z