BBa_J04500 1 BBa_J04500 IPTG inducible promoter with RBS 2005-06-08T11:00:00Z 2015-08-31T04:08:14Z Davidson Synth-Aces Released HQ 2013 R0010.B0034 false true _16_ 0 326 16 In stock false false Kristen DeCelle component1508149 1 BBa_R0010 component1508159 1 BBa_B0034 annotation1508159 1 BBa_B0034 range1508159 1 209 220 annotation1508149 1 BBa_R0010 range1508149 1 1 200 BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_K1717000 1 BBa_K1717000 Keratinase A under control of LacI promoter. 2015-09-12T11:00:00Z 2015-09-18T11:16:51Z Found on the following website: http://www.uniprot.org/uniprot/Q53521. This part is a composite of an IPTG-inducible promoter with RBS (BBa_J04500) and a custom-synthesized KERATINASE A expressing plasmid. The coding sequence for Keratinase A was originally isolated in Bacillus, we have now optimized for expression in E.coli. To do this, the signal peptide has been changed. false false _2137_ 19766 25516 9 false The bacteria that we are using is a strand of e-coli called K- 12. This strain has a negative granam making it opposite to the gram-positive bacter (Bacillus Licheniformis) the Keratinase that we chose to utilize for our project was found in. After extensive research and looking at the projects of chicago, sheffield and Taiga we learnt that the different ganaam is what causes the issues with the secretion of the keratinase as it gets stuck in the periplasm due to the fact that the signal peptides of the keratin can???t be read by the E. coli. After considering all of this we learned that we must completely remove the gram positive signal sequence, in order to fix this problem. The gram positive signal sequence was completely removed and in its place is PelB (BBa_J32015). false Our Lady of the Snows Catholic Academy 2015 component2453595 1 BBa_J04500 component2453596 1 BBa_K1717171 annotation2453595 1 BBa_J04500 range2453595 1 1 220 annotation2453596 1 BBa_K1717171 range2453596 1 229 1341 BBa_R0010 1 LacI promoter (lacI regulated) 2003-01-31T12:00:00Z 2015-05-08T01:14:14Z The Plac insert was PCR'd from the MG1655 strain of E.coli K12. Released HQ 2013 Inverting regulatory region controlled by LacI (<bb_part>BBa_C0010</bb_part>, <bb_part>BBa_C0011</bb_part>, etc.) <p> The pLac regulatory region is a 243 base-pair sequence with standard BioBrick prefix and suffix sections on its ends. It contains two protein binding sites: CAP, which is generally present in E.coli and is assocciated with cell health and availability of glucose., and LacI, the Lac inhibitor <bb_part>BBa_C0010</bb_part> which binds in an dimerized cooperative manner to inhibit the transcription of the protein that follows. In the presence of lactose or IPTG, an analog of lactose, LacI is unable to correctly bind and inhibit transcription. This allows <bb_part>BBa_R0010</bb_part> to be used as a inverter or as a detector of lactose or IPTG. false true _1_ 0 24 7 In stock false <P> <P><P> LacI binds to this regulator. This part is incompatible with species containing active LacI coding regions. Lactose and IPTG disable the operation of LacI and this regulator. This part is incompatible with environments containing lactose or lactose analogs. true annotation1961223 1 CAP binding site range1961223 1 89 126 annotation1961222 1 BBa_R0010 range1961222 1 1 200 annotation1961225 1 -10 range1961225 1 161 166 annotation1961224 1 -35 range1961224 1 137 142 annotation1961227 1 start range1961227 1 173 173 annotation1961226 1 LacI binding site range1961226 1 166 200 annotation1961221 1 end of LacI coding region (inactive) range1961221 1 1 88 BBa_K1717171 1 KERA Protein coding sequence for KeratinaseA 2015-09-12T11:00:00Z 2015-09-18T10:16:33Z Found on the following website: http://www.uniprot.org/uniprot/Q53521. This sequence codes for Keratinase A. It has been optimized for expression in E.coli. false false _2137_ 25516 25516 9 false The bacteria that we are using is a strand of e-coli called K- 12. This strain has a negative granam making it opposite to the gram-positive bacter (Bacillus Licheniformis) the Keratinase that we chose to utilize for our project was found in. After extensive research and looking at the projects of chicago, sheffield and Taiga we learnt that the different ganaam is what causes the issues with the secretion of the keratinase as it gets stuck in the periplasm due to the fact that the signal peptides of the keratin can???t be read by the E. coli. After considering all of this we learned that we must completely remove the gram positive signal sequence, in order to fix this problem. The gram positive signal sequence was completely removed and in its place is PelB (BBa_J32015). false Our Lady of the Snows Catholic Academy 2015 BBa_K1717000_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaatactagagaaatacctgctgccgaccgctgctgctggtctgctgctcctcgctgcccagccggcgatggccgctcaaccggcgaaaaatgttgaaaaggattatattgtcggatttaagtcaggagtgaaaaccgcatctgtcaaaaaggacatcatcaaagagagcggcggaaaagtggacaagcagtttagaatcatcaacgcggcaaaagcgaagctagacaaagaagcgcttaaggaagtcaaaaatgatccggatgtcgcttatgtggaagaggatcatgtggcccatgccttggcgcaaaccgttccttacggcattcctctcattaaagcggacaaagtgcaggctcaaggctttaagggagcgaatgtaaaagtagccgtcctggatacaggaatccaagcttctcatccggacttgaacgtagtcggcggagcaagctttgtggctggcgaagcttataacaccgacggcaacggacacggcacacatgttgccggtacagtagctgcgcttgacaatacaacgggtgtattaggcgttgcgccaagcgtatccttgtacgcggttaaagtactgagttcaagcggaagcggatcatacagcggcattgtaagcggaatcgagtgggcgacaacaaacggcatggatgttatcaatatgagccttgggggagcatcaggctcgacagcgatgaaacaggcagtcgacaatgcatatgcaagaggggttgtcgttgtagctgcaacagggaacagcggatcttcaggaaacacgaatacaattggctatcctgcgaaatacgattctgtcatcgctgttggtgcggtagactctaacagcaacagagcttcattttccagtgtgggagcagagcttgaagtcatggctcctggcgcaggcgtatacagcacttacccaacgaacacttatgcaacattgaacggaacgtcaatggtttctcctcatgtagcgggagcagcagctttgatcttgtcaaaacatccgaacctttcagcttcacaagtccgcaaccgtctctccagcacggcgacttatttgggaagctccttctactatgggaaaggtctgatcaatgtcgaagctgccgctcaa BBa_R0010_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca BBa_B0034_sequence 1 aaagaggagaaa BBa_J04500_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaa BBa_K1717171_sequence 1 atgaaatacctgctgccgaccgctgcggcaggtctgctgctgctggctgcacaacctgctatggcagctcaacctgcaaagaatgttgagaaggattacatcgttggtttcaaatccggtgtgaagaccgctagcgttaagaaagacatcatcaaagagagcggtggtaaagtggacaaacagttccgtatcatcaacgcggctaaagcgaaactggacaaagaggcgctgaaagaagtcaagaacgacccggacgtcgcttacgtggaagaagaccacgtggcgcacgcactggcgcagaccgtcccgtacggtatcccgctgatcaaagcggacaaagtgcaggctcagggtttcaaaggtgcgaacgtgaaagtggcagtgctggacaccggtatccaggcaagccacccagacctgaacgtggtgggtggcgcttcttttgttgctggtgaagcatacaacaccgatggtaacggtcacggcactcacgtggcaggcactgttgctgcactggataatactacgggtgtactgggtgttgcaccaagcgtatctctgtacgcagttaaagtactgaacagcagcggcagcggtagctacagcggtatcgtaagcggtatcgaatgggcaaccaccaacggtatggatgttattaacatgtccctgggcggcgcctccggttccactgctatgaaacaggccgttgataacgcctacgctcgtggtgttgtcgtcgtagcggcagccggtaactccggctcttccggcaatactaacaccattggctacccggctaaatacgattccgtaattgccgttggcgcggttgattccaactccaaccgcgcgtccttctcctctgtaggcgctgaactggaagtaatggctccgggcgcgggcgtttattctacttatccgacgaacacctatgcgaccctgaacggcacctctatggtttctccgcatgttgcgggcgcggcggccctgattctgtctaaacatccgaatctgtctgcctctcaggttcgtaaccgcctgtcttctacggcgacctatctgggctcttctttttattatggcaaaggcctgattaacgttgaagccgccgcgcagtaa igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 Chris J. Myers James Alastair McLaughlin 2017-03-06T15:00:00.000Z