BBa_K081005 1 BBa_K081005 constitutive promoter family member and RBS 2008-10-17T11:00:00Z 2015-05-08T01:08:34Z Promoter: John Anderson. RBS: Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. Released HQ 2013 Constitutive promoter (strong) with RBS (strong, efficiency=0.3) false true _227_ 0 2583 9 In stock true We used BioBrick Standard Assembly. true Lorenzo Pasotti, Paolo Magni component1981863 1 BBa_J23100 component1981865 1 BBa_B0030 annotation1981865 1 BBa_B0030 range1981865 1 44 58 annotation1981863 1 BBa_J23100 range1981863 1 1 35 BBa_B1006 1 BBa_B1006 Terminator (artificial, large, %T~>90) 2006-08-30T11:00:00Z 2015-08-31T04:07:21Z modified E. coli thr terminator, replaced all A-T pairs in stem with C-G pairs Released HQ 2013 Artificial terminator, estimated %T~>90% *8bp stem, 6nt loop *Bidirectional, estimated reverse %T~>90% false true _41_ 0 745 41 In stock false Bidirectional, with the reverse estimated to be less effective than the forward. Has a polyA tail of 9 residues. true Haiyao Huang annotation1898429 1 modified thr terminator range1898429 1 10 31 annotation1898431 1 PolyA range1898431 1 1 9 annotation1898430 1 PolyA range1898430 1 32 39 annotation1898428 1 B1006 range1898428 1 1 39 BBa_J04500 1 BBa_J04500 IPTG inducible promoter with RBS 2005-06-08T11:00:00Z 2015-08-31T04:08:14Z Davidson Synth-Aces Released HQ 2013 R0010.B0034 false true _16_ 0 326 16 In stock false false Kristen DeCelle component1508149 1 BBa_R0010 component1508159 1 BBa_B0034 annotation1508149 1 BBa_R0010 range1508149 1 1 200 annotation1508159 1 BBa_B0034 range1508159 1 209 220 BBa_K1719010 1 BBa_K1719010 Circuit encoding leucine dehydrogenase and formate dehydrogenase 2015-09-04T11:00:00Z 2015-09-17T09:02:58Z asdasd asdasd false false _2139_ 25238 25236 9 false asdasda false Lin Shi component2443980 1 BBa_K1719006 component2443998 1 BBa_K1719007 annotation2443998 1 BBa_K1719007 range2443998 1 1221 2678 annotation2443980 1 BBa_K1719006 range2443980 1 1 1212 BBa_B0012 1 BBa_B0012 TE from coliphageT7 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>. Released HQ 2013 Transcription terminator for the <i>E.coli</i> RNA polymerase. false false _1_ 0 24 7 In stock false <P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator. false Reshma Shetty annotation7020 1 BBa_B0012 range7020 1 1 41 annotation1687 1 stop range1687 1 34 34 annotation1690 1 polya range1690 1 28 41 annotation1686 1 T7 TE range1686 1 8 27 BBa_K1719007 1 BBa_K1719007 Promoter+RBS+FDH+Terminator 2015-09-04T11:00:00Z 2015-09-17T04:42:56Z asdasd asdasdasd false false _2139_ 25238 25236 9 false asdasdasd false Lin Shi component2443924 1 BBa_J04500 component2443932 1 BBa_B0015 component2443925 1 BBa_K1719001 annotation2443924 1 BBa_J04500 range2443924 1 1 220 annotation2443932 1 BBa_B0015 range2443932 1 1330 1458 annotation2443925 1 BBa_K1719001 range2443925 1 227 1321 BBa_B0030 1 BBa_B0030 RBS.1 (strong) -- modified from R. Weiss 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 Strong RBS based on Ron Weiss thesis. Strength is considered relative to <bb_part>BBa_B0031</bb_part>, <bb_part>BBa_B0032</bb_part>, <bb_part>BBa_B0033</bb_part>. false true _44_46_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix (&quot;orig&quot; in figure 4-14 of Ron Weiss thesis). <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation1701 1 RBS-1\Strong range1701 1 1 15 annotation1702 1 RBS range1702 1 8 12 annotation7025 1 BBa_B0030 range7025 1 1 15 BBa_B0010 1 BBa_B0010 T1 from E. coli rrnB 2003-11-19T12:00:00Z 2015-08-31T04:07:20Z Transcriptional terminator consisting of a 64 bp stem-loop. false false _1_ 0 24 7 In stock false true Randy Rettberg annotation7018 1 BBa_B0010 range7018 1 1 80 annotation4184 1 stem_loop range4184 1 12 55 BBa_K1719000 1 BBa_K1719000 A gene encoding leucine dehydrogenase 2015-09-04T11:00:00Z 2015-09-17T05:26:13Z asdasdasd asdasdasdasd false false _2139_ 25238 25236 9 false asdasdasdasd false Lin Shi BBa_K1719001 1 BBa_K1719001 A gene encoding formate dehydrogenase 2015-09-04T11:00:00Z 2015-09-17T05:27:05Z aassvvbb aasssvvbb false false _2139_ 25238 25238 9 false aassvvbb false Shibo Liu BBa_J23100 1 BBa_J23100 constitutive promoter family member 2006-08-03T11:00:00Z 2015-08-31T04:08:40Z Isolated from library of promoters Released HQ 2013 Replace later false true _52_ 0 483 95 In stock true N/A true John Anderson BBa_B0015 1 BBa_B0015 double terminator (B0010-B0012) 2003-07-16T11:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 Double terminator consisting of BBa_B0010 and BBa_B0012 false true _1_ 0 24 7 In stock false true Reshma Shetty component1916612 1 BBa_B0012 component1916610 1 BBa_B0010 annotation1916612 1 BBa_B0012 range1916612 1 89 129 annotation1916610 1 BBa_B0010 range1916610 1 1 80 BBa_R0010 1 LacI promoter (lacI regulated) 2003-01-31T12:00:00Z 2015-05-08T01:14:14Z The Plac insert was PCR'd from the MG1655 strain of E.coli K12. Released HQ 2013 Inverting regulatory region controlled by LacI (<bb_part>BBa_C0010</bb_part>, <bb_part>BBa_C0011</bb_part>, etc.) <p> The pLac regulatory region is a 243 base-pair sequence with standard BioBrick prefix and suffix sections on its ends. It contains two protein binding sites: CAP, which is generally present in E.coli and is assocciated with cell health and availability of glucose., and LacI, the Lac inhibitor <bb_part>BBa_C0010</bb_part> which binds in an dimerized cooperative manner to inhibit the transcription of the protein that follows. In the presence of lactose or IPTG, an analog of lactose, LacI is unable to correctly bind and inhibit transcription. This allows <bb_part>BBa_R0010</bb_part> to be used as a inverter or as a detector of lactose or IPTG. false true _1_ 0 24 7 In stock false <P> <P><P> LacI binds to this regulator. This part is incompatible with species containing active LacI coding regions. Lactose and IPTG disable the operation of LacI and this regulator. This part is incompatible with environments containing lactose or lactose analogs. true annotation1961226 1 LacI binding site range1961226 1 166 200 annotation1961223 1 CAP binding site range1961223 1 89 126 annotation1961224 1 -35 range1961224 1 137 142 annotation1961227 1 start range1961227 1 173 173 annotation1961222 1 BBa_R0010 range1961222 1 1 200 annotation1961221 1 end of LacI coding region (inactive) range1961221 1 1 88 annotation1961225 1 -10 range1961225 1 161 166 BBa_K1719006 1 BBa_K1719006 Promoter+RBS+LeuDH+Terminator 2015-09-04T11:00:00Z 2015-09-17T04:43:39Z aassvvbb aassvvbb false false _2139_ 25238 25238 9 false aassvvbb false Shibo Liu component2443881 1 BBa_B1006 component2443876 1 BBa_K1719000 component2443875 1 BBa_K081005 annotation2443881 1 BBa_B1006 range2443881 1 1174 1212 annotation2443875 1 BBa_K081005 range2443875 1 1 58 annotation2443876 1 BBa_K1719000 range2443876 1 65 1165 BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_R0010_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca BBa_B0034_sequence 1 aaagaggagaaa BBa_K1719000_sequence 1 atgacattggaaatcttcgaatatctggaaaagtatgattatgaacaggttgtgttttgtcaggacaaagagagcggactgaaagcaattatcgccattcatgacactaccctgggaccggctctcggcggtacccgcatgtggacctatgattcagaggaagcggcaatcgaagatgcactccgtctggcaaaaggcatgacatataaaaacgcagctgctggtttaaatctgggtggcgcgaaaaccgtcattattggcgatccgcgtaaagataaatcagaagcgatgtttcgtgccctgggtcgctacatccaagggctgaacgggcgttatattaccgcggaagatgtaggcactacggttgacgatatggatatcattcacgaggagactgattttgtcacgggcatctctccgtccttcgggagctccggaaatccgtctccggttaccgcttatggggtttaccgcgggatgaaagcggcggcgaaagaggcgtttggtaccgacaatttagagggcaaagtgattgcggtgcaaggtgtgggcaatgtggcctatcacctttgcaagcacctgcacgccgagggtgcaaagttaattgtcaccgacatcaataaggaggccgtccagcgtgccgtagaggagttcggtgctacggcggtggagcctaacgaaatttatggggtggaatgcgacatttatgcgccatgtgcactcggcgcaacggtaaatgatgaaaccatcccacagcttaaagcgaaagtgattgccggcagcgctaataatcagcttaaagaagatcggcatggcgatatcattcatgaaatgggcatcgtctacgccccggattatgttattaatgcgggtggtgttattaacgtggcggatgaactgtacggctataaccgcgaacgtgcactgaaacgtgtggaaagcatttacgacaccattgccaaggtgatcgaaatctcgaaacgggatggcatcgccacgtacgtagccgcggatcggttggcggaagaacgcatcgcctcgttgaaaaacagtcgctcgacgtatctgcgcaacggccatgacatcattagtcgccggtaa BBa_J23100_sequence 1 ttgacggctagctcagtcctaggtacagtgctagc BBa_K1719001_sequence 1 atgaaaattgtcctggtcctgtatgacgcgggcaaacatgcggccgatgaggagaaactttacggatctacggaaaataaactggggatcgccaattggctgaaagatcagggccacgaactgatcaccacaagtgataaagaaggggaaacaagcgaattggataagcatattccggatgcagatatcattattactacgccgtttcatccagcatatatcaccaaagaacgcctcgataaagctaagaacctgaagttggtggtagtcgcaggggtggggtcggatcatattgacctggattacattaatcagaccgggaaaaaaatttctgtgttagaagttaccggcagtaatgtcgtttctgtggccgaacacgtggttatgaccatgttggttctggtgcgcaactttgtgccagcacatgaacagattatcaatcacgactgggaggttgccgcgatcgcaaaagacgcctacgatatcgaaggaaaaactatcgctactatcggtgcgggccgcatcggttatcgtgttttggagcgtcttctgccttttaacccgaaagagctcttatattacgattatcaggccttaccgaaagaagcggaagagaaagtaggtgcgcgtcgtgtggaaaatatcgaagaattagtagcgcaagcagatatcgtgacggtgaacgcgcctctccatgccggtacgaaaggcctgattaataaggaactcctgtccaaattcaaaaaaggtgcgtggcttgtgaataccgctcgcggtgcgatttgcgtcgctgaagacgtggcggcagcgctggagagcggccaacttcgcggttatggcggtgacgtatggtttccgcagccggctccgaaagaccacccatggcgcgacatgcgtaacaaatatggcgcgggcaacgccatgaccccgcattattcgggtaccaccctggatgcccaaacccggtacgcagagggcaccaagaatattctggagtcatttttcacgggcaaattcgattatcggccgcaggatattattctgttgaacggagagtatgttacgaaggcctatggcaaacacgataaaaagtaa BBa_B0010_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc BBa_K081005_sequence 1 ttgacggctagctcagtcctaggtacagtgctagctactagagattaaagaggagaaa BBa_J04500_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaa BBa_B0030_sequence 1 attaaagaggagaaa BBa_K1719010_sequence 1 ttgacggctagctcagtcctaggtacagtgctagctactagagattaaagaggagaaatactagatgacattggaaatcttcgaatatctggaaaagtatgattatgaacaggttgtgttttgtcaggacaaagagagcggactgaaagcaattatcgccattcatgacactaccctgggaccggctctcggcggtacccgcatgtggacctatgattcagaggaagcggcaatcgaagatgcactccgtctggcaaaaggcatgacatataaaaacgcagctgctggtttaaatctgggtggcgcgaaaaccgtcattattggcgatccgcgtaaagataaatcagaagcgatgtttcgtgccctgggtcgctacatccaagggctgaacgggcgttatattaccgcggaagatgtaggcactacggttgacgatatggatatcattcacgaggagactgattttgtcacgggcatctctccgtccttcgggagctccggaaatccgtctccggttaccgcttatggggtttaccgcgggatgaaagcggcggcgaaagaggcgtttggtaccgacaatttagagggcaaagtgattgcggtgcaaggtgtgggcaatgtggcctatcacctttgcaagcacctgcacgccgagggtgcaaagttaattgtcaccgacatcaataaggaggccgtccagcgtgccgtagaggagttcggtgctacggcggtggagcctaacgaaatttatggggtggaatgcgacatttatgcgccatgtgcactcggcgcaacggtaaatgatgaaaccatcccacagcttaaagcgaaagtgattgccggcagcgctaataatcagcttaaagaagatcggcatggcgatatcattcatgaaatgggcatcgtctacgccccggattatgttattaatgcgggtggtgttattaacgtggcggatgaactgtacggctataaccgcgaacgtgcactgaaacgtgtggaaagcatttacgacaccattgccaaggtgatcgaaatctcgaaacgggatggcatcgccacgtacgtagccgcggatcggttggcggaagaacgcatcgcctcgttgaaaaacagtcgctcgacgtatctgcgcaacggccatgacatcattagtcgccggtaatactagagaaaaaaaaaccccgcccctgacagggcggggtttttttttactagagcaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaatactagatgaaaattgtcctggtcctgtatgacgcgggcaaacatgcggccgatgaggagaaactttacggatctacggaaaataaactggggatcgccaattggctgaaagatcagggccacgaactgatcaccacaagtgataaagaaggggaaacaagcgaattggataagcatattccggatgcagatatcattattactacgccgtttcatccagcatatatcaccaaagaacgcctcgataaagctaagaacctgaagttggtggtagtcgcaggggtggggtcggatcatattgacctggattacattaatcagaccgggaaaaaaatttctgtgttagaagttaccggcagtaatgtcgtttctgtggccgaacacgtggttatgaccatgttggttctggtgcgcaactttgtgccagcacatgaacagattatcaatcacgactgggaggttgccgcgatcgcaaaagacgcctacgatatcgaaggaaaaactatcgctactatcggtgcgggccgcatcggttatcgtgttttggagcgtcttctgccttttaacccgaaagagctcttatattacgattatcaggccttaccgaaagaagcggaagagaaagtaggtgcgcgtcgtgtggaaaatatcgaagaattagtagcgcaagcagatatcgtgacggtgaacgcgcctctccatgccggtacgaaaggcctgattaataaggaactcctgtccaaattcaaaaaaggtgcgtggcttgtgaataccgctcgcggtgcgatttgcgtcgctgaagacgtggcggcagcgctggagagcggccaacttcgcggttatggcggtgacgtatggtttccgcagccggctccgaaagaccacccatggcgcgacatgcgtaacaaatatggcgcgggcaacgccatgaccccgcattattcgggtaccaccctggatgcccaaacccggtacgcagagggcaccaagaatattctggagtcatttttcacgggcaaattcgattatcggccgcaggatattattctgttgaacggagagtatgttacgaaggcctatggcaaacacgataaaaagtaatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata BBa_B1006_sequence 1 aaaaaaaaaccccgcccctgacagggcggggtttttttt BBa_K1719007_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaatactagatgaaaattgtcctggtcctgtatgacgcgggcaaacatgcggccgatgaggagaaactttacggatctacggaaaataaactggggatcgccaattggctgaaagatcagggccacgaactgatcaccacaagtgataaagaaggggaaacaagcgaattggataagcatattccggatgcagatatcattattactacgccgtttcatccagcatatatcaccaaagaacgcctcgataaagctaagaacctgaagttggtggtagtcgcaggggtggggtcggatcatattgacctggattacattaatcagaccgggaaaaaaatttctgtgttagaagttaccggcagtaatgtcgtttctgtggccgaacacgtggttatgaccatgttggttctggtgcgcaactttgtgccagcacatgaacagattatcaatcacgactgggaggttgccgcgatcgcaaaagacgcctacgatatcgaaggaaaaactatcgctactatcggtgcgggccgcatcggttatcgtgttttggagcgtcttctgccttttaacccgaaagagctcttatattacgattatcaggccttaccgaaagaagcggaagagaaagtaggtgcgcgtcgtgtggaaaatatcgaagaattagtagcgcaagcagatatcgtgacggtgaacgcgcctctccatgccggtacgaaaggcctgattaataaggaactcctgtccaaattcaaaaaaggtgcgtggcttgtgaataccgctcgcggtgcgatttgcgtcgctgaagacgtggcggcagcgctggagagcggccaacttcgcggttatggcggtgacgtatggtttccgcagccggctccgaaagaccacccatggcgcgacatgcgtaacaaatatggcgcgggcaacgccatgaccccgcattattcgggtaccaccctggatgcccaaacccggtacgcagagggcaccaagaatattctggagtcatttttcacgggcaaattcgattatcggccgcaggatattattctgttgaacggagagtatgttacgaaggcctatggcaaacacgataaaaagtaatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata BBa_K1719006_sequence 1 ttgacggctagctcagtcctaggtacagtgctagctactagagattaaagaggagaaatactagatgacattggaaatcttcgaatatctggaaaagtatgattatgaacaggttgtgttttgtcaggacaaagagagcggactgaaagcaattatcgccattcatgacactaccctgggaccggctctcggcggtacccgcatgtggacctatgattcagaggaagcggcaatcgaagatgcactccgtctggcaaaaggcatgacatataaaaacgcagctgctggtttaaatctgggtggcgcgaaaaccgtcattattggcgatccgcgtaaagataaatcagaagcgatgtttcgtgccctgggtcgctacatccaagggctgaacgggcgttatattaccgcggaagatgtaggcactacggttgacgatatggatatcattcacgaggagactgattttgtcacgggcatctctccgtccttcgggagctccggaaatccgtctccggttaccgcttatggggtttaccgcgggatgaaagcggcggcgaaagaggcgtttggtaccgacaatttagagggcaaagtgattgcggtgcaaggtgtgggcaatgtggcctatcacctttgcaagcacctgcacgccgagggtgcaaagttaattgtcaccgacatcaataaggaggccgtccagcgtgccgtagaggagttcggtgctacggcggtggagcctaacgaaatttatggggtggaatgcgacatttatgcgccatgtgcactcggcgcaacggtaaatgatgaaaccatcccacagcttaaagcgaaagtgattgccggcagcgctaataatcagcttaaagaagatcggcatggcgatatcattcatgaaatgggcatcgtctacgccccggattatgttattaatgcgggtggtgttattaacgtggcggatgaactgtacggctataaccgcgaacgtgcactgaaacgtgtggaaagcatttacgacaccattgccaaggtgatcgaaatctcgaaacgggatggcatcgccacgtacgtagccgcggatcggttggcggaagaacgcatcgcctcgttgaaaaacagtcgctcgacgtatctgcgcaacggccatgacatcattagtcgccggtaatactagagaaaaaaaaaccccgcccctgacagggcggggtttttttt BBa_B0012_sequence 1 tcacactggctcaccttcgggtgggcctttctgcgtttata BBa_B0015_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 Chris J. Myers James Alastair McLaughlin 2017-03-06T15:00:00.000Z