BBa_K176037
1
VR3 bindin
Reverse primer VR3 (K176047) binding site
2009-08-12T11:00:00Z
2015-05-08T01:11:02Z
Reverse complement of VR3 (K176047). Picked from random sequences.
This part can be ligated into composite parts as a primer binding site for PCR identification of the part or sequencing of the part. It will be very useful when many composite parts have similar lengths, then PCR using VF2 and VR cannot be used to identify the parts.
Reverse primers VR3~VR12 are designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design. These primers are designed to be perfectly paired with VF2 and without cross-reactivities to each other.
false
false
_282_
0
3908
9
It's complicated
true
Designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design.
Main parameters for picking VR3~VR12:
Size: 20 bp (N19 + G or C)
Tm: VF2 Tm ??1℃
GC%: 50%
Max Self Complementarity: 3 bp
Max 3' Self Complementarity: 2 bp
Max Pair Complementarity: 3 bp
Max 3' Pair Complementarity: 2 bp
Max 3' Stability: 3.36 kcal/mol
Max Template(pSB1A3) Mispriming: 6 bp
Max Mispriming With Other VR3~VR12 Sites: 4 bp
false
Jiayi Dou, Hao Jiang
annotation2017241
1
VF3
range2017241
1
1
20
BBa_K176100
1
BBa_K176100
constitutive promoter family member J23100 (pCon 1.00) with primer VR3 site
2009-09-05T11:00:00Z
2015-05-08T01:11:03Z
K176037 J23100
VR3 binding site + pCon 1.00
false
false
_282_
0
3908
9
It's complicated
true
VR3 binding site + pCon 1.00
false
Jiayi Dou, Hao Jiang
component2018777
1
BBa_J23100
component2018776
1
BBa_K176037
annotation2018776
1
BBa_K176037
range2018776
1
1
20
annotation2018777
1
BBa_J23100
range2018777
1
29
63
BBa_J23100
1
BBa_J23100
constitutive promoter family member
2006-08-03T11:00:00Z
2015-08-31T04:08:40Z
Isolated from library of promoters
Released HQ 2013
Replace later
false
true
_52_
0
483
95
In stock
true
N/A
true
John Anderson
BBa_J23100_sequence
1
ttgacggctagctcagtcctaggtacagtgctagc
BBa_K176100_sequence
1
caatacaactttcggcggcatactagagttgacggctagctcagtcctaggtacagtgctagc
BBa_K176037_sequence
1
caatacaactttcggcggca
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z