BBa_K176038
1
VR4 bindin
Reverse primer VR4 (K176048) binding site
2009-08-12T11:00:00Z
2015-05-08T01:11:02Z
Reverse complement of VR4 (K176048). Picked from random sequences.
This part can be ligated into composite parts as a primer binding site for PCR identification of the part or sequencing of the part. It will be very useful when many composite parts have similar lengths, then PCR using VF2 and VR cannot be used to identify the parts.
Reverse primers VR3~VR12 are designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design. These primers are designed to be perfectly paired with VF2 and without cross-reactivities to each other.
false
false
_282_
0
3908
9
It's complicated
true
Designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design.
Main parameters for picking VR3~VR12:
Size: 20 bp (N19 + G or C)
Tm: VF2 Tm ??1℃
GC%: 50%
Max Self Complementarity: 3 bp
Max 3' Self Complementarity: 2 bp
Max Pair Complementarity: 3 bp
Max 3' Pair Complementarity: 2 bp
Max 3' Stability: 3.36 kcal/mol
Max Template(pSB1A3) Mispriming: 6 bp
Max Mispriming With Other VR3~VR12 Sites: 4 bp
false
Jiayi Dou, Hao Jiang
annotation2017242
1
VR4
range2017242
1
1
20
BBa_K176101
1
BBa_K176101
constitutive promoter family member J23101 (pCon 0.70) with primer VR4 site
2009-09-05T11:00:00Z
2015-05-08T01:11:03Z
K176038 J23101
VR4 binding site + pCon 0.70
false
false
_282_
0
3908
9
It's complicated
true
VR4 binding site + pCon 0.70
false
Jiayi Dou, Hao Jiang
component2018780
1
BBa_J23101
component2018779
1
BBa_K176038
annotation2018780
1
BBa_J23101
range2018780
1
29
63
annotation2018779
1
BBa_K176038
range2018779
1
1
20
BBa_J23101
1
BBa_J23101
constitutive promoter family member
2006-08-03T11:00:00Z
2015-08-31T04:08:40Z
later
Released HQ 2013
later
false
true
_52_
0
483
95
In stock
true
N/A
true
John Anderson
BBa_K176101_sequence
1
ggtttggtgcgtgttgttagtactagagtttacagctagctcagtcctaggtattatgctagc
BBa_K176038_sequence
1
ggtttggtgcgtgttgttag
BBa_J23101_sequence
1
tttacagctagctcagtcctaggtattatgctagc
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z