BBa_K176039
1
VR5 bindin
Reverse primer VR5 (K176049) binding site
2009-08-12T11:00:00Z
2015-05-08T01:11:02Z
Reverse complement of VR5 (K176049). Picked from random sequences.
This part can be ligated into composite parts as a primer binding site for PCR identification of the part or sequencing of the part. It will be very useful when many composite parts have similar lengths, then PCR using VF2 and VR cannot be used to identify the parts.
Reverse primers VR3~VR12 are designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design. These primers are designed to be perfectly paired with VF2 and without cross-reactivities to each other.
false
false
_282_
0
3908
9
It's complicated
true
Designed with our software tool, which is modified from primer3 to pick primers from random sequences for synthetic biological primer design.
Main parameters for picking VR3~VR12:
Size: 20 bp (N19 + G or C)
Tm: VF2 Tm ??1℃
GC%: 50%
Max Self Complementarity: 3 bp
Max 3' Self Complementarity: 2 bp
Max Pair Complementarity: 3 bp
Max 3' Pair Complementarity: 2 bp
Max 3' Stability: 3.36 kcal/mol
Max Template(pSB1A3) Mispriming: 6 bp
Max Mispriming With Other VR3~VR12 Sites: 4 bp
false
Jiayi Dou, Hao Jiang
annotation2017243
1
VR5
range2017243
1
1
20
BBa_J23103
1
BBa_J23103
constitutive promoter family member
2006-08-03T11:00:00Z
2015-08-31T04:08:40Z
isolated from library of promoters
Released HQ 2013
replace later
false
true
_52_
0
483
95
In stock
true
N/A
true
John Anderson
BBa_K176105
1
BBa_K176105
constitutive promoter family member J23103 (pCon 0.01) with primer VR5 site
2009-09-05T11:00:00Z
2015-05-08T01:11:03Z
K176039 J23103
VR5 binding site + pCon 0.01
false
false
_282_
0
3908
9
It's complicated
true
VR5 binding site + pCon 0.01
false
Jiayi Dou, Hao Jiang
component2018805
1
BBa_J23103
component2018804
1
BBa_K176039
annotation2018805
1
BBa_J23103
range2018805
1
29
63
annotation2018804
1
BBa_K176039
range2018804
1
1
20
BBa_K176105_sequence
1
gttatcggttgtgcgtcctttactagagctgatagctagctcagtcctagggattatgctagc
BBa_J23103_sequence
1
ctgatagctagctcagtcctagggattatgctagc
BBa_K176039_sequence
1
gttatcggttgtgcgtcctt
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z