BBa_K1878008
1
BBa_K1878008
SoxRS/iRFP670
2016-10-13T11:00:00Z
2016-10-15T03:55:32Z
Used sequences from Biobrick registry
Senses superoxide and nitric oxide and produces iRFP 670
false
false
_2343_
25183
26215
9
false
Used classical cloning
false
Margaret Lie
component2511765
1
BBa_J23106
component2511769
1
BBa_K554003
component2511778
1
BBa_K554000
component2511776
1
BBa_B0015
component2511779
1
BBa_K1878000
annotation2511765
1
BBa_J23106
range2511765
1
1
35
annotation2511769
1
BBa_K554003
range2511769
1
44
526
annotation2511776
1
BBa_B0015
range2511776
1
535
663
annotation2511778
1
BBa_K554000
range2511778
1
672
733
annotation2511779
1
BBa_K1878000
range2511779
1
740
1675
BBa_K554003
1
BBa_K554003
SoxR
2011-09-20T11:00:00Z
2015-05-08T01:12:40Z
Synthesized sequence.
Released HQ 2013
SoxR is ...
false
false
_722_
0
7971
9
In stock
true
false
UNICAMP EMSE Brazil team
annotation2136872
1
stop
range2136872
1
478
483
annotation2136855
1
RBS
range2136855
1
1
15
annotation2136870
1
SoxR
range2136870
1
16
477
BBa_B0012
1
BBa_B0012
TE from coliphageT7
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>.
Released HQ 2013
Transcription terminator for the <i>E.coli</i> RNA polymerase.
false
false
_1_
0
24
7
In stock
false
<P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator.
false
Reshma Shetty
annotation1687
1
stop
range1687
1
34
34
annotation1690
1
polya
range1690
1
28
41
annotation1686
1
T7 TE
range1686
1
8
27
annotation7020
1
BBa_B0012
range7020
1
1
41
BBa_B0015
1
BBa_B0015
double terminator (B0010-B0012)
2003-07-16T11:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
Double terminator consisting of BBa_B0010 and BBa_B0012
false
true
_1_
0
24
7
In stock
false
true
Reshma Shetty
component1916612
1
BBa_B0012
component1916610
1
BBa_B0010
annotation1916612
1
BBa_B0012
range1916612
1
89
129
annotation1916610
1
BBa_B0010
range1916610
1
1
80
BBa_K554000
1
BBa_K554000
SoxS promoter
2011-09-20T11:00:00Z
2015-05-08T01:12:40Z
Synthesized sequence.
Released HQ 2013
SoxS promoter
false
false
_722_
0
7971
9
In stock
true
false
UNICAMP_EMSE Brazil team
annotation2136873
1
SoxS
range2136873
1
1
62
BBa_K1878000
1
BBa_K1878000
iRFP670
2016-10-13T11:00:00Z
2016-10-14T04:26:40Z
iRFP670 is a mutated form of the Rhodopseudomonas palustris bacterial phytochrome photoreceptor.
Shcherbakova, D. M. & Verkhusha, V. V. Near-infrared fluorescent proteins for multicolor in vivo imaging. 10, (2013).
iRFP670 is a fluorescent protein that has an excitation wavelength of 643 nm and an emission wavelength of 670 nm. It utilizes billiverdin as a chromophore. The extinction coefficient is 114,000 M−1 cm−1, and the quantum yield is 11.1%. It is twice as bright as iRFP713 (formerly known as iRFP). The photobleaching half-life is 290 s and pKa is 4.0. Near-infrared fluorescent proteins are good for long-term in vivo imaging and exhibit high brightness in bacteria, mammalian cells, and mice.
false
false
_2343_
26215
26215
9
false
The PstI site within the reporter has been removed. There are several BsaI sites within the protein so do not use the BsaI enzyme for Golden Gate DNA Assembly.
false
Margaret Lie
BBa_J23106
1
BBa_J23106
constitutive promoter family member
2006-08-13T11:00:00Z
2015-08-31T04:08:40Z
Isolated from library of promoters
Released HQ 2013
Later
false
true
_52_
0
483
95
In stock
true
N/A
true
John Anderson
BBa_B0010
1
BBa_B0010
T1 from E. coli rrnB
2003-11-19T12:00:00Z
2015-08-31T04:07:20Z
Transcriptional terminator consisting of a 64 bp stem-loop.
false
false
_1_
0
24
7
In stock
false
true
Randy Rettberg
annotation4184
1
stem_loop
range4184
1
12
55
annotation7018
1
BBa_B0010
range7018
1
1
80
BBa_B0010_sequence
1
ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc
BBa_K1878000_sequence
1
atgccgcgtaaggtcgatctcacctcctgcgatcgcgagccgatccacatccccggcagcattcagccgtgcggctgcctgctagcctgcgacgcgcaggcggtgcggatcacgcgcattacggaaaatgccggcgcgttctttggacgcgaaactccgcgggtcggtgagctactcgccgattacttcggcgagaccgaagcccatgcgctgcgcaacgcactggcgcagtcctccgatccaaagcgaccggcgctgatcttcggttggcgcgacggcctgaccggccgcaccttcgacatctcactgcatcgccatgacggtacatcgatcatcgagttcgagcctgcggcggccgaacaggccgacaatccgctgcggctgacgcggcagatcatcgcgcgcaccaaagaactgaagtcgctcgaagagatggccgcacgggtgccgcgctatctgcaagcgatgctcggctatcaccgcgtgatgttgtaccgcttcgcggacgacggctccgggatggtgatcggcgaggcgaagcgcagcgacctcgagagctttctcggtcagcactttccggcgtcgctggtcccgcagcaggcgcggctactgtacttgaagaacgcgatccgcgtggtctcggattcgcgcggcatcagcagccggatcgtgcccgagcacgacgcctccggcgccgcgctcgatctgtcgttcgcgcacctgcgcagcatctcgccctgccatctcgaatttctgcggaacatgggcgtcagcgcctcgatgtcgctgtcgatcatcattgacggcacgctatggggattgatcatctgtcatcattacgagccgcgtgccgtgccgatggcgcagcgcgtcgcggccgaaatgttcgccgacttcttatcgctgcacttcaccgccgcccaccaccaacgctaa
BBa_K554003_sequence
1
attaaagaggagaaaatggaaaagaaattaccccgcattaaagcgctgctaacccccggcgaagtggcgaaacgcagcggtgtggcggtatcggcgctgcatttctatgaaagtaaagggttgattaccagtatccgtaacagcggcaatcagcggcgatataaacgtgatgtgttgcgatatgttgcaattatcaaaattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatacgttaagtgcgaaagagtggaaacagctttcgtcccaatggcgagaagagttggatcggcgcattcataccttagtggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaataa
BBa_K1878008_sequence
1
tttacggctagctcagtcctaggtatagtgctagctactagagattaaagaggagaaaatggaaaagaaattaccccgcattaaagcgctgctaacccccggcgaagtggcgaaacgcagcggtgtggcggtatcggcgctgcatttctatgaaagtaaagggttgattaccagtatccgtaacagcggcaatcagcggcgatataaacgtgatgtgttgcgatatgttgcaattatcaaaattgctcagcgtattggcattccgctggcgaccattggtgaagcgtttggcgtgttgcccgaagggcatacgttaagtgcgaaagagtggaaacagctttcgtcccaatggcgagaagagttggatcggcgcattcataccttagtggcgctgcgtgacgaactggacggatgtattggttgtggctgcctttcgcgcagtgattgcccgttgcgtaacccgggcgaccgcttaggagaagaaggtaccggcgcacgcttgctggaagatgaacaaaactaataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagaatcgctttacctcaagttaacttgaggaattatactccccaacagatgaattaacgaactgtactagatgccgcgtaaggtcgatctcacctcctgcgatcgcgagccgatccacatccccggcagcattcagccgtgcggctgcctgctagcctgcgacgcgcaggcggtgcggatcacgcgcattacggaaaatgccggcgcgttctttggacgcgaaactccgcgggtcggtgagctactcgccgattacttcggcgagaccgaagcccatgcgctgcgcaacgcactggcgcagtcctccgatccaaagcgaccggcgctgatcttcggttggcgcgacggcctgaccggccgcaccttcgacatctcactgcatcgccatgacggtacatcgatcatcgagttcgagcctgcggcggccgaacaggccgacaatccgctgcggctgacgcggcagatcatcgcgcgcaccaaagaactgaagtcgctcgaagagatggccgcacgggtgccgcgctatctgcaagcgatgctcggctatcaccgcgtgatgttgtaccgcttcgcggacgacggctccgggatggtgatcggcgaggcgaagcgcagcgacctcgagagctttctcggtcagcactttccggcgtcgctggtcccgcagcaggcgcggctactgtacttgaagaacgcgatccgcgtggtctcggattcgcgcggcatcagcagccggatcgtgcccgagcacgacgcctccggcgccgcgctcgatctgtcgttcgcgcacctgcgcagcatctcgccctgccatctcgaatttctgcggaacatgggcgtcagcgcctcgatgtcgctgtcgatcatcattgacggcacgctatggggattgatcatctgtcatcattacgagccgcgtgccgtgccgatggcgcagcgcgtcgcggccgaaatgttcgccgacttcttatcgctgcacttcaccgccgcccaccaccaacgctaa
BBa_J23106_sequence
1
tttacggctagctcagtcctaggtatagtgctagc
BBa_B0012_sequence
1
tcacactggctcaccttcgggtgggcctttctgcgtttata
BBa_K554000_sequence
1
aatcgctttacctcaagttaacttgaggaattatactccccaacagatgaattaacgaactg
BBa_B0015_sequence
1
ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
James Alastair McLaughlin
Chris J. Myers
2017-03-06T15:00:00.000Z