BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_K1977006 1 BBa_K1977006 HemD uroporphyrinogen III methyltransferase 2016-10-07T11:00:00Z 2016-10-08T09:51:54Z Rhodobacter sphaeroides Catalyses the stepwise decarboxylation of the four acetic acid chains to yield the corresponding methyl groups of coproporphyrinogen III false false _2444_ 27435 27435 9 false None false Amritpal Singh BBa_B0012 1 BBa_B0012 TE from coliphageT7 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>. Released HQ 2013 Transcription terminator for the <i>E.coli</i> RNA polymerase. false false _1_ 0 24 7 In stock false <P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator. false Reshma Shetty annotation1686 1 T7 TE range1686 1 8 27 annotation7020 1 BBa_B0012 range7020 1 1 41 annotation1687 1 stop range1687 1 34 34 annotation1690 1 polya range1690 1 28 41 BBa_R0010 1 LacI promoter (lacI regulated) 2003-01-31T12:00:00Z 2015-05-08T01:14:14Z The Plac insert was PCR'd from the MG1655 strain of E.coli K12. Released HQ 2013 Inverting regulatory region controlled by LacI (<bb_part>BBa_C0010</bb_part>, <bb_part>BBa_C0011</bb_part>, etc.) <p> The pLac regulatory region is a 243 base-pair sequence with standard BioBrick prefix and suffix sections on its ends. It contains two protein binding sites: CAP, which is generally present in E.coli and is assocciated with cell health and availability of glucose., and LacI, the Lac inhibitor <bb_part>BBa_C0010</bb_part> which binds in an dimerized cooperative manner to inhibit the transcription of the protein that follows. In the presence of lactose or IPTG, an analog of lactose, LacI is unable to correctly bind and inhibit transcription. This allows <bb_part>BBa_R0010</bb_part> to be used as a inverter or as a detector of lactose or IPTG. false true _1_ 0 24 7 In stock false <P> <P><P> LacI binds to this regulator. This part is incompatible with species containing active LacI coding regions. Lactose and IPTG disable the operation of LacI and this regulator. This part is incompatible with environments containing lactose or lactose analogs. true annotation1961223 1 CAP binding site range1961223 1 89 126 annotation1961221 1 end of LacI coding region (inactive) range1961221 1 1 88 annotation1961225 1 -10 range1961225 1 161 166 annotation1961226 1 LacI binding site range1961226 1 166 200 annotation1961224 1 -35 range1961224 1 137 142 annotation1961222 1 BBa_R0010 range1961222 1 1 200 annotation1961227 1 start range1961227 1 173 173 BBa_B0015 1 BBa_B0015 double terminator (B0010-B0012) 2003-07-16T11:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 Double terminator consisting of BBa_B0010 and BBa_B0012 false true _1_ 0 24 7 In stock false true Reshma Shetty component1916610 1 BBa_B0010 component1916612 1 BBa_B0012 annotation1916612 1 BBa_B0012 range1916612 1 89 129 annotation1916610 1 BBa_B0010 range1916610 1 1 80 BBa_K1977007 1 BBa_K1977007 HemD_RhtA 2016-10-07T11:00:00Z 2016-10-08T10:04:30Z None Final Construct for HemD_RhtA. false false _2444_ 27435 27435 9 false LacI, RBS, HemD, RhtA, Double terminator false Amritpal Singh component2488195 1 BBa_B0034 component2488204 1 BBa_B0015 component2488197 1 BBa_K1977006 component2488187 1 BBa_R0010 component2488196 1 BBa_K1977000 annotation2488196 1 BBa_K1977000 range2488196 1 229 1195 annotation2488204 1 BBa_B0015 range2488204 1 2039 2167 annotation2488187 1 BBa_R0010 range2488187 1 1 200 annotation2488197 1 BBa_K1977006 range2488197 1 1204 2030 annotation2488195 1 BBa_B0034 range2488195 1 209 220 BBa_B0010 1 BBa_B0010 T1 from E. coli rrnB 2003-11-19T12:00:00Z 2015-08-31T04:07:20Z Transcriptional terminator consisting of a 64 bp stem-loop. false false _1_ 0 24 7 In stock false true Randy Rettberg annotation7018 1 BBa_B0010 range7018 1 1 80 annotation4184 1 stem_loop range4184 1 12 55 BBa_K1977000 1 BBa_K1977000 RhtA 2016-10-07T11:00:00Z 2016-10-08T09:57:04Z TTGACAATTAATCATCGGCTCGTATAATGTACTAGAGTTGTGAGCGGATAACAATACTAGAGAAAGAGGAGAAATACTAGATGCTGAAAAACTTTAACCTGCTGGGCGGCTTTATTCTGAGCAAACTGAACACCACCCGCAGCAAAGCCGCGTTTAAAGAAGCCCAGAAATACATGCCGGGTGGCGTGAACAGCCCGGTGCGTGCCTTTAAAAACGTGGGTGGCGACCCGCTGTTTATTGATCATGGCAAGGATGAATACATCTATGACATCGATGGCAACAAATACATCGACTATGTGCTGAGCTGGGGTCCGCTGATTCTGGGTCATGCGGATGACCAGGTGGTGGCGGAACTGGATAAAGCGGTGGCGAAAGGCACCAGCTATGGCGCCCCGACCCTGCAAGAAACCGAACTGGCGAAAATTGTGAACAAAATTATGCCGAGCATTGAAATGATTCGCATGGTGAGCAGCGGCACCGAAGCGACCATGAGCGCGATTCGCCTGGCCCGCGGCTACACCCGCCGCGAAAAAATTGTGAAATTTGTGGGCAACTATCATGGTCATAGCGATAGCCTGCTGGTGGATGCGGGCAGCGGTCTGGCGACCTTTGGCATTAACACCAGCCCGGGCGTGCCGGATGACCTGGCGTATGATACCCTGACCGTGGCGTACAACGATGTGGATGGTGTGAAAAAACTGTTTGCGGATCATGGCGATGAAATTGCGTGTGCGATTGTGGAACCGGTGGCGGGCAACATGGGCGTGATTCCGGGCACCCAGGATTTTCTGCAAACCCTGCGCGATGTGACCAAAGAACATGGCAGCCTGCTGATTTTTGATGAAGTGATGAGCGGCTTTCGTGCCGCGTATCATGGCGTGCAGAGCCTGGTGAACATTACCCCGGATCTGACCACCCTGGGCAAAGTGATTGGTGGTGGTCTGCCGGTGGGCGCGTTTGGCGGTCGCCGCGAAATTATGGAACAGATTACCCCGGCTGGCAGCATTTATCATGCTGGCACCCTGAGCGGCAACCCGCTGGCGATGACCGGTGGCATTAGCACCCTGAAACAGCTGACCCCGGAAGATTATGTGGAAATGGATAAAAAAGTGACCGCGCTGACCGATGGCATTAAACAGGCGGCGGATAAATACGGTGTGCCGATGACCGTGCATCATGTGGGCACCATGTGGAGCTATTTTTACAACAGCGATAGCATTAACAACTTTGATGATGTGAAAGCGTGCGATCAGAAACTGTTTGAAAAATGCTTTTGGGAACTGCTGGCGCATGGCGTGTATGTGGCGCCGAGCCAGTTTGAAACCAACTTTATTAGCACCAAACATACCGATGAAGACATTGAAAAAACCATTGCCGCGTTTGATGCGGCGTTTAACGCGGCGACCAAATAATAA Lactobacillus reuteri The glutamate-1-semialdehyde-2,1-aminomutase belongs to the family of isomerases. It is also called glutamate-1-semialdehyde aminotransferase. This enzyme participates in the porphyrin and chlorophyll biosynthesis where it catalyses L-glutamate 1-semialdehyde (GSA) to 5-aminolevulinate in the C5 pathway. false false _2444_ 27435 30384 9 false When designing the sequence we added a tac promoter, lac operator and a RBS. It is in BioBrick standard format. false Camila Gaspar BBa_B0010_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc BBa_K1977007_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaatactagagaaagaggagaaatactagatgccgggtccgagccgcaaagcggcggcgtggctgccgatcctggttatcctgattgcgatgaccagcattcaaagcggcgcaagcctggcgaaatctctgtttccgctggttggcgcgccgggcgtgaccgcattgcgtctggcgttgggtacgctgattctggttgtggtgttcaaaccgtggcgcctgcgctttagcccggcgcaacgcgtgccgctgttgctgtatggtttggccctgggtgcgatgaactatctgttctatctgagcctgcaacgcattccgttgggcgttgcggtggccctggagtttaccggtccgcttgcggtggcactgtttggcagccgccgcccgcttgattttgtgtgggttgccttggcgattctgggcctgtggtatttgttgccgttgggtcaaaacgttgcgcaagtggatctgaccggtgcgttgtttgcgttgggtgcgggtgcgtgctgggcggtgtatattctgaccggccaacgcgcgggcgaagaacatggtccggcgaccgttgcgatgggttctctgattgcgtctctggtgtttgttccgctgggtatggcgcaggcgaccgataccctgtggcagtggagcctgttgccgatgggcctgggcattgcgatcctgagcaccgcgctgccgtatagcctggaaatgatggccctgacccgcctgccgacccgcacctttggcaccctgatgtctctggaaccggcgttggcggcgctgagcggcatggtgtttctgggcgaaacgctgaaactgagccaaaccttggcgctgggcgcgattattattgcgagcatgggcgcgaccctgaccatgccgcgccagagcaaaattgaacaagttgatattaactaataatactagagttattgctcatgcggtggcagcagccaactcagcttcctttcgggctttgtactagagttgacaattaatcatcggctcgtataatgtactagagttgtgagcggataacaatactagagaaagaggagaaatactagatggcgccgcagagccgtccgctgctgccggcggtgctgctgacccgtccggaagcgcagggtgcgcgctttgcggtggcgctgcgtgaagcgctgggtccggtgcgtctggtgaccagcccgctgatggtgccggaatttctgagcccgccgattgcgctgcgcccagaagcgctgatttttaccagcgaaaccggcgtggaaggctttcgtcgtctggctgcgccaggtctggcgggtgtgggccgtgcatggtgcgtgggtaaccgtaccgcacgtgcagcgcgtgcagcgggcctggatgcgcagagcgcggaaggcgatgcggaagcactgattgcggcgattgcagcggcaggtgaaagcggtccgctgctgcatctgcgtggcgcggaaagccgtggcgaagtggcgccgcgtctggcagcgcagggcctggtggcggaagaagcggtggtgtatgatcagcgtccgcagccgctgctgccggaagcgctggcgctgctggcgggtggtgcaccggtgctggcgccgctgtttagcccgcgtaccgcgcgtctgctgggtctggaactggcgcgtgcgggtgtggcaccgcagctgtgggtggcggcaatgagcccggcggtggcagaagccgcgggtgcactgagcccggcacgtctgcgtgttgcagcacgtccggatgcagaagcgctgctggacgcggtgaaagcgctgctggatgcggaagcggatgcgtaataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata BBa_R0010_sequence 1 caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca BBa_K1977006_sequence 1 ttgacaattaatcatcggctcgtataatgtactagagttgtgagcggataacaatactagagaaagaggagaaatactagatggcgccgcagagccgtccgctgctgccggcggtgctgctgacccgtccggaagcgcagggtgcgcgctttgcggtggcgctgcgtgaagcgctgggtccggtgcgtctggtgaccagcccgctgatggtgccggaatttctgagcccgccgattgcgctgcgcccagaagcgctgatttttaccagcgaaaccggcgtggaaggctttcgtcgtctggctgcgccaggtctggcgggtgtgggccgtgcatggtgcgtgggtaaccgtaccgcacgtgcagcgcgtgcagcgggcctggatgcgcagagcgcggaaggcgatgcggaagcactgattgcggcgattgcagcggcaggtgaaagcggtccgctgctgcatctgcgtggcgcggaaagccgtggcgaagtggcgccgcgtctggcagcgcagggcctggtggcggaagaagcggtggtgtatgatcagcgtccgcagccgctgctgccggaagcgctggcgctgctggcgggtggtgcaccggtgctggcgccgctgtttagcccgcgtaccgcgcgtctgctgggtctggaactggcgcgtgcgggtgtggcaccgcagctgtgggtggcggcaatgagcccggcggtggcagaagccgcgggtgcactgagcccggcacgtctgcgtgttgcagcacgtccggatgcagaagcgctgctggacgcggtgaaagcgctgctggatgcggaagcggatgcgtaataa BBa_B0034_sequence 1 aaagaggagaaa BBa_K1977000_sequence 1 aaagaggagaaatactagatgccgggtccgagccgcaaagcggcggcgtggctgccgatcctggttatcctgattgcgatgaccagcattcaaagcggcgcaagcctggcgaaatctctgtttccgctggttggcgcgccgggcgtgaccgcattgcgtctggcgttgggtacgctgattctggttgtggtgttcaaaccgtggcgcctgcgctttagcccggcgcaacgcgtgccgctgttgctgtatggtttggccctgggtgcgatgaactatctgttctatctgagcctgcaacgcattccgttgggcgttgcggtggccctggagtttaccggtccgcttgcggtggcactgtttggcagccgccgcccgcttgattttgtgtgggttgccttggcgattctgggcctgtggtatttgttgccgttgggtcaaaacgttgcgcaagtggatctgaccggtgcgttgtttgcgttgggtgcgggtgcgtgctgggcggtgtatattctgaccggccaacgcgcgggcgaagaacatggtccggcgaccgttgcgatgggttctctgattgcgtctctggtgtttgttccgctgggtatggcgcaggcgaccgataccctgtggcagtggagcctgttgccgatgggcctgggcattgcgatcctgagcaccgcgctgccgtatagcctggaaatgatggccctgacccgcctgccgacccgcacctttggcaccctgatgtctctggaaccggcgttggcggcgctgagcggcatggtgtttctgggcgaaacgctgaaactgagccaaaccttggcgctgggcgcgattattattgcgagcatgggcgcgaccctgaccatgccgcgccagagcaaaattgaacaagttgatattaactaataatactagagttattgctcatgcggtggcagcagccaactcagcttcctttcgggctttg BBa_B0012_sequence 1 tcacactggctcaccttcgggtgggcctttctgcgtttata BBa_B0015_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z