BBa_K260010 1 BBa_K260010 pMA-BsdR-@CC2FosM 2009-10-17T11:00:00Z 2015-05-08T01:11:42Z Geneart plasmid pMA, with 2x 70 bp from pCC2FosM ([[Part:BBa_K260000|]]). DESCRIPTION: This plasmid backbone is based on pMA from Geneart. It has BioBrick prefix and suffix flanked on both sides by 70 bp of homology arms and a blasticidin resistance cassette (BsdR) for insertion of the contained BioBrick into the proper locus of pCC2FosM ([[Part:BBa_K260000|]]) by recombineering using the HincII fragment including the BioBrick. The product of this reaction is the pCC2FosMB backbone ([[Part:BBa_K260001|]]), which then contains the same BioBrick that was inside the present backbone [[Part:BBa_K260010|]] before, with BioBrick prefix and sufix maintained intact. Initially this was done with the TT_FRT_GFP BioBrick ([[Part:BBa_K260016|]]) using [[Part:BBa_K260010|]]-[[Part:BBa_K260016|]]. The pMA-@CC2FosMB-00500bp backbone is available with [[Part:BBa_K260015|]], which is composed of promoter-FRT-dhfr. If the PvuII fragment from [[Part:BBa_K260004|]]-[[Part:BBa_K260015|]] is transferred by recombineering to the the 00500 locus of [[Part:BBa_K260001|]]-[[Part:BBa_K260016|]], the intervening sequence between the FRT sites of [[Part:BBa_K260015|]] and [[Part:BBa_K260016|]] on the [[Part:BBa_K260001|]] backbone will be 500 bp exactly. These plasmid backbones are similar and all allow recombineering-mediated transfer of the contained BioBrick (typically [[Part:BBa_K260015|]]) to the pCC2FosMB backbone [[Part:BBa_K2600001|]]. They differ in the homology arms, which determines the locus of insertion into pCC2FosMB. The bp numbers denote final inter-FRT distance as described above: [[Part:BBa_K260004|]]: pMA-CC2FosMB-00500bp [[Part:BBa_K260005|]]: pMA-CC2FosMB-01000bp [[Part:BBa_K260006|]]: pMA-CC2FosMB-02000bp [[Part:BBa_K260007|]]: pMA-CC2FosMB-05000bp [[Part:BBa_K260008|]]: pMA-RQ-CC2FosMB-10000bp SOURCE: Geneart plasmid pMA, with 2x 70 bp from pCC2FosMB [[Part:K260001|]]. DESIGN: The 70 bp homologies were designed to delete 100 bp of [[Part:BBa_K260001|]]-[[Part:BBa_K260016|]] and put the FRT site of [[Part:BBa_K260015|]] (if used with the present backbone [[Part:BBa_K260004|]]) at a defined distance from the FRT site of [[Part:BBa_K260016|]]. false false _356_ 0 1072 57 Not in stock true The 2x 70 bp homologies were designed to delete 100 bp of pCC2FosM ([[Part:BBa_K260000]]). The insertion site on pCC2FosM was chosen to be upstream of MECP2 exon 1 but still with more than 10 kb of MECP genomic sequence upstream. false Kaj Bernhardt annotation2049723 1 gb3 promoter range2049723 1 22 115 annotation2049728 1 AmpR range2049728 1 1141 2001 annotation2049730 1 BBa_K260000 5' homology range2049730 1 3006 3075 annotation2049729 1 HincII site range2049729 1 3000 3005 annotation2049724 1 optimised BsdR range2049724 1 116 514 annotation2049727 1 HincII site range2049727 1 624 629 annotation2049731 1 prefix range2049731 1 3076 3097 annotation2049725 1 BBa_B1006 (terminator) range2049725 1 515 553 annotation2049726 1 BBa_K260000 3' homology range2049726 1 554 623 annotation2049721 1 suffix range2049721 1 1 21 annotation2049722 1 ColE1 origin range2049722 1 2149 2816 BBa_K260010_sequence 1 tactagtagcggccgctgcagtatggccacaacctgttacattgcacaagataaaaatatatcatcacgaacagtaaaactgtctgcttacataaacagtaatacaaggggtgttatggccaagccactgtctcaagaagaatccaccctgattgaaagagcaactgcaaccatcaacagcatcccaatctctgaagactattctgttgcctctgctgcactgtcttctgatggcagaatcttcactggtgtcaatgtatatcattttactggtggcccttgtgcagaactggttgtgctgggcacagcagcagcagctgctgctggcaacctgacttgtattgttgccattggtaatgagaacagaggcatcctgagcccatgtggcagatgcagacaggtgctgctggatctgcatcctggcatcaaagctattgtgaaggactctgatggtcagccaactgctgttggcattagagaactgctgccatctggttatgtgtgggagggctgaaaaaaaaaaccccgcccctgacagggcggggttttttttagtaggcaaggctggctcaacattcaaaaatcaattaaagaggccgggcgcggtggctcacgcctgtcatgttaacgagctcatggcgcgcctaggccttgacggccttccgccaattcgccctatagtgagtcgtattacgtcgcgctcactggccgtcgttttacaacgtcgtgactgggaaaaccctggcgttacccaacttaatcgccttgcagcacatccccctttcgccagctggcgtaatagcgaagaggcccgcaccgaaacgcccttcccaacagttgcgcagcctgaatggcgaatgggagcgccctgtagcggccactcaaccctatctcggtctattcttttgatttataagggattttgccgatttcggcctattggttaaaaaatgagctgatttaacaaaaatttaacgcgaattttaacaaaatattaacgcttacaatttaggtggcacttttcggggaaatgtgcgcggaacccctatttgtttatttttctaaatacattcaaatatgtatccgctcatgagacaataaccctgataaatgcttcaataatattgaaaaaggaagagtatgagtattcaacatttccgtgtcgcccttattcccttttttgcggcattttgccttcctgtttttgctcacccagaaacgctggtgaaagtaaaagatgctgaagatcagttgggtgcacgagtgggttacatcgaactggatctcaacagcggtaagatccttgagagttttcgccccgaagaacgttttccaatgatgagcacttttaaagttctgctatgtggcgcggtattatcccgtattgacgccgggcaagagcaactcggtcgccgcatacactattctcagaatgacttggttgagtactcaccagtcacagaaaagcatcttacggatggcatgacagtaagagaattatgcagtgctgccataaccatgagtgataacactgcggccaacttacttctgacaacgatcggaggaccgaaggagctaaccgcttttttgcacaacatgggggatcatgtaactcgccttgatcgttgggaaccggagctgaatgaagccataccaaacgacgagcgtgacaccacgatgcctgtagcaatggcaacaacgttgcgcaaactattaactggcgaactacttactctagcttcccggcaacaattaatagactggatggaggcggataaagttgcaggaccacttctgcgctcggcccttccggctggctggtttattgctgataaatctggagccggtgagcgtggttctcgcggtatcattgcagcactggggccagatggtaagccctcccgtatcgtagttatctacacgacggggagtcaggcaactatggatgaacgaaatagacagatcgctgagataggtgcctcactgattaagcattggtaactgtcagaccaagtttactcatatatactttagattgatttaaaacttcatttttaatttaaaaggatctaggtgaagatcctttttgataatctcatgaccaaaatcccttaacgtgagttttcgttccactgagcgtcagaccccgtagaaaagatcaaaggatcttcttgagatcctttttttctgcgcgtaatctgctgcttgcaaacaaaaaaaccaccgctaccagcggtggtttgtttgccggatcaagagctaccaactctttttccgaaggtaactggcttcagcagagcgcagataccaaatactgttcttctagtgtagccgtagttaggccaccacttcaagaactctgtagcaccgcctacatacctcgctctgctaatcctgttaccagtggctgctgccagtggcgataagtcgtgtcttaccgggttggactcaagacgatagttaccggataaggcgcagcggtcgggctgaacggggggttcgtgcacacagcccagcttggagcgaacgacctacaccgaactgagatacctacagcgtgagctatgagaaagcgccacgcttcccgaagggagaaaggcggacaggtatccggtaagcggcagggtcggaacaggagagcgcacgagggagcttccagggggaaacgcctggtatctttatagtcctgtcgggtttcgccacctctgacttgagcgtcgatttttgtgatgctcgtcaggggggcggagcctatggaaaaacgccagcaacgcggcctttttacggttcctggccttttgctggccttttgctcattaggcaccccaggctttacccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggagagcgcccaatacgcaaggaaacagctatgaccatgttaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcggaaggcccatgaggccagttaattaagaggtaccgttaactctatgaggctagcatcaccttgatgtcaaaaccagaagacataccaagaaaactatagaccaatatcccgaattcgcggccgcttctagag igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z