BBa_K277087
1
BBa_K277087
3L.3_23.C3.08
2009-10-20T11:00:00Z
2015-05-08T01:11:46Z
Synthetic Yeast
3L.3_23.C3.08 is 669 bases long and is cloned into the pGem-T vector.
3L.3_23.C3.08 was designed as a piece of synthetic chromosome 3 with the goal of minimizing and stabilizing that chromosome and to that end has had any tRNAs, introns, repeat regions, and transposons that were present in the wildtype chromosome removed. In addition a very few gene sequences were slightly recoded to add or remove restriction enzyme recognition sites to facilitate assembly; most gene sequences were slightly recoded to introduce unique primers for diagnostic PCR amplification, and some gene sequences were slightly recoded to address the distribution of stop codon usage. The whole synthetic chromosome may be viewed at http://macbeth.clark.jhu.edu/cgi-bin/gbrowse 3L.3_23.C3.08 is a constituent of 3L.3_23.C3 (along with 3L.3_23.C3.01, 3L.3_23.C3.02, 3L.3_23.C3.03, 3L.3_23.C3.04, 3L.3_23.C3.05, 3L.3_23.C3.06, 3L.3_23.C3.07, 3L.3_23.C3.09, 3L.3_23.C3.10, 3L.3_23.C3.11, 3L.3_23.C3.12, 3L.3_23.C3.13, and 3L.3_23.C3.14.)
This part contains at least part of the following features (positions offset from first base of sequence):
kind and name offset notes
gene YCL026C-B (658..+1239) Putative protein of unknown function%3B green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus
gene YCL027W (-978..560) Membrane protein localized to the shmoo tip%2C required for cell fusion%3B expression regulated by mating pheromone%3B proposed to coordinate signaling%2C fusion%2C and polarization events required for fusion%3B potential Cdc28p substrate
loxP_site loxPsym_YCL027W (564..597)
forward_primer YCL027W_tagf2v1 (68..95)
reverse_primer YCL027W_tagr2v1 (266..293)
Sequence (corresponds to coordinates 63461..64129 in synthetic chromosome yeast_chr3_3_23)
false
false
_385_
0
2669
9
It's complicated
false
Constructed using overlap extension PCR protocol described in RFC38
false
James DiCarlo
BBa_K277087_sequence
1
acagtgtgaataacttgggtaataccacgccagattcacaaatcacatcttatcgcaacaataacattgacttgattaccgctcgaccacacagcgtgatatacggtactactgcacaacaaactttggaaaccaacttcaatgatcatcatgactgcaataaaagcactgagaaacacgagttgataatacccaccccatcaaaaccactaaagaaaaggaaaaaaagaagacaaagtaaaatgtatcagcatttacaacatttaagccgaagcaagcctctaccattgaccccaaactccaaatataatggggaggctagcgtccaattagggaagacatatacagttattcaggattacgagcctagattgacagacgaaataagaatctcgctgggtgaaaaagttaaaattctggccactcataccgatggatggtgtctggtagaaaagtgtaatacacaaaagggttctattcacgtcagtgttgacgataaaagatacctcaatgaagatagaggcattgtgcctggtgactgtctccaagaatacgactgatgaataacttcgtataatgtacattatacgaagttataaataatattgacgttcgcatttaatctatacctataattctgtacttatatactgttccttaattgaagat
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z