BBa_K277125
1
BBa_K277125
3L.3_23.D3.04
2009-10-20T11:00:00Z
2015-05-08T01:11:47Z
Synthetic Yeast
3L.3_23.D3.04 is 748 bases long and is cloned into the pGem-T vector.
3L.3_23.D3.04 was designed as a piece of synthetic chromosome 3 with the goal of minimizing and stabilizing that chromosome and to that end has had any tRNAs, introns, repeat regions, and transposons that were present in the wildtype chromosome removed. In addition a very few gene sequences were slightly recoded to add or remove restriction enzyme recognition sites to facilitate assembly; most gene sequences were slightly recoded to introduce unique primers for diagnostic PCR amplification, and some gene sequences were slightly recoded to address the distribution of stop codon usage. The whole synthetic chromosome may be viewed at http://macbeth.clark.jhu.edu/cgi-bin/gbrowse 3L.3_23.D3.04 is a constituent of 3L.3_23.D3 (along with 3L.3_23.D3.01, 3L.3_23.D3.02, 3L.3_23.D3.03, 3L.3_23.D3.05, 3L.3_23.D3.06, 3L.3_23.D3.07, 3L.3_23.D3.08, 3L.3_23.D3.09, 3L.3_23.D3.10, 3L.3_23.D3.11, and 3L.3_23.D3.12.)
This part contains at least part of the following features (positions offset from first base of sequence):
kind and name offset notes
gene YCL004W (-698..+867) Phosphatidylglycerolphosphate synthase%2C catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis
reverse_primer YCL004W_tagr2v1 (144..171)
Sequence (corresponds to coordinates 90728..91475 in synthetic chromosome yeast_chr3_3_23)
false
false
_385_
0
2669
9
It's complicated
false
Constructed using overlap extension PCR protocol described in RFC38
false
James DiCarlo
BBa_K277125_sequence
1
agttatcagattataaagccaatggtggatggtagcatcaacatcatttggccagattcgaatcctactgttgaaccgacgaaaaataaaaggctgtttttaagggaagcatctcaattactagatggctttttaaagagttccaagcaatctttgccaatcaccgctgttggtcaattctccacattagtttacccaatttctcaattcactccactttttcccaaatataatgacaaatcgaccgaaaaaagaacaatattgtcattgctttccactataacaagcaatgccatttcttggacgttcactgcaggatacttcaatattttgccagacatcaaagcaaaactgctggcaacgccggttgctgaggcaaatgtaataacagcttccccctttgcaaacggcttttaccaatcaaagggcgtcagttcaaatttacctggtgcttacttgtacctgtcaaaaaaatttctacaagatgtatgtaggtacagacaagatcatgctattacattaagagaatggcaaagaggcgtagtaaataagccgaatggttggtcatatcacgcaaaaggtatttggctttccgctcgtgataaaaatgatgctaacaattggaaaccctttatcacggttataggatcttcaaactatacgagaagggcgtattcattagatttggaatcgaatgctctcattattacaagagatgaagagctaagaaaaaaaatgaaagcagagt
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z