T6SS
type: ComponentDefinition
persistent identity: BBa K314300
display id: BBa_K314300
version: 1
was generated by: iGEM to SBOL conversion
description: T6SS fosmid
created: 2010-10-21T11:00:00Z
modified: 2015-05-08T01:11:55Z
mutable provenance: Pseudomonas aeruginosain
owned by: james
owned by: myers
mutable description: Type six secretion system from Pseudomonas aeruginosain a pCC2Fos CopyControl Fosmid.
discontinued: false
dominant: true
experience: experience/Works
group u list: _496_
m user id: 0
owner id: 6501
owning group id: 9
sample status: It's complicated
status: status/Planning
bookmark: true
mutable notes: space holder
star: false
creator: Laura Austin
type: DnaRegion
role: SO:0000110
role: partType/DNA
sequence annotation: ppkA
sequence annotation: pppA
sequence annotation: icmF1
sequence annotation: fha1
sequence annotation: RBS
sequence annotation: T7 promoter
sequence annotation: hcp1
sequence annotation: clpV1
sequence annotation: VgrG1
sequence: https://synbiohub.org/public/igem/BBa_K314300_sequence/1

ppkA
type: SequenceAnnotation
persistent identity: annotation2109311
display id: annotation2109311
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109311/range2109311/1
role: feature/protein
role: SO:0000316

https://synbiohub.org/public/igem/BBa_K314300/annotation2109311/range2109311/1
type: Range
persistent identity: range2109311
display id: range2109311
version: 1
top level: T6SS
direction: direction/reverse
start: 13048
end: 16146
orientation: inline

pppA
type: SequenceAnnotation
persistent identity: annotation2109312
display id: annotation2109312
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109312/range2109312/1
role: feature/protein
role: SO:0000316

https://synbiohub.org/public/igem/BBa_K314300/annotation2109312/range2109312/1
type: Range
persistent identity: range2109312
display id: range2109312
version: 1
top level: T6SS
direction: direction/reverse
start: 16153
end: 16881
orientation: inline

icmF1
type: SequenceAnnotation
persistent identity: annotation2109313
display id: annotation2109313
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109313/range2109313/1
role: SO:0000316
role: feature/protein

https://synbiohub.org/public/igem/BBa_K314300/annotation2109313/range2109313/1
type: Range
persistent identity: range2109313
display id: range2109313
version: 1
top level: T6SS
direction: direction/reverse
start: 17568
end: 20872
orientation: inline

fha1
type: SequenceAnnotation
persistent identity: annotation2109314
display id: annotation2109314
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109314/range2109314/1
role: SO:0000316
role: feature/protein

https://synbiohub.org/public/igem/BBa_K314300/annotation2109314/range2109314/1
type: Range
persistent identity: range2109314
display id: range2109314
version: 1
top level: T6SS
direction: direction/reverse
start: 24312
end: 25806
orientation: inline

RBS
type: SequenceAnnotation
persistent identity: annotation2109320
display id: annotation2109320
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109320/range2109320/1
role: SO:0000139
role: feature/rbs

https://synbiohub.org/public/igem/BBa_K314300/annotation2109320/range2109320/1
type: Range
persistent identity: range2109320
display id: range2109320
version: 1
top level: T6SS
direction: direction/reverse
start: 25812
end: 25817
orientation: inline

T7 promoter
type: SequenceAnnotation
persistent identity: annotation2109335
display id: annotation2109335
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109335/range2109335/1
role: feature/promoter
role: SO:0000167

https://synbiohub.org/public/igem/BBa_K314300/annotation2109335/range2109335/1
type: Range
persistent identity: range2109335
display id: range2109335
version: 1
top level: T6SS
direction: direction/reverse
start: 25825
end: 25844
orientation: inline

T7 promoter
type: SequenceAnnotation
persistent identity: annotation2109383
display id: annotation2109383
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109383/range2109383/1
role: feature/promoter
role: SO:0000167

https://synbiohub.org/public/igem/BBa_K314300/annotation2109383/range2109383/1
type: Range
persistent identity: range2109383
display id: range2109383
version: 1
top level: T6SS
direction: direction/forward
start: 25876
end: 25894
orientation: inline

RBS
type: SequenceAnnotation
persistent identity: annotation2109387
display id: annotation2109387
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109387/range2109387/1
role: feature/rbs
role: SO:0000139

https://synbiohub.org/public/igem/BBa_K314300/annotation2109387/range2109387/1
type: Range
persistent identity: range2109387
display id: range2109387
version: 1
top level: T6SS
direction: direction/forward
start: 25900
end: 25905
orientation: inline

hcp1
type: SequenceAnnotation
persistent identity: annotation2109315
display id: annotation2109315
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109315/range2109315/1
role: SO:0000316
role: feature/protein

https://synbiohub.org/public/igem/BBa_K314300/annotation2109315/range2109315/1
type: Range
persistent identity: range2109315
display id: range2109315
version: 1
top level: T6SS
direction: direction/forward
start: 29150
end: 29628
orientation: inline

clpV1
type: SequenceAnnotation
persistent identity: annotation2109316
display id: annotation2109316
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109316/range2109316/1
role: SO:0000316
role: feature/protein

https://synbiohub.org/public/igem/BBa_K314300/annotation2109316/range2109316/1
type: Range
persistent identity: range2109316
display id: range2109316
version: 1
top level: T6SS
direction: direction/forward
start: 34011
end: 36719
orientation: inline

VgrG1
type: SequenceAnnotation
persistent identity: annotation2109317
display id: annotation2109317
version: 1
top level: T6SS
location: https://synbiohub.org/public/igem/BBa_K314300/annotation2109317/range2109317/1
role: SO:0000316
role: feature/protein

https://synbiohub.org/public/igem/BBa_K314300/annotation2109317/range2109317/1
type: Range
persistent identity: range2109317
display id: range2109317
version: 1
top level: T6SS
direction: direction/forward
start: 36764
end: 38693
orientation: inline

https://synbiohub.org/public/igem/BBa_K314300_sequence/1
type: Sequence
persistent identity: BBa K314300 sequence
display id: BBa_K314300_sequence
version: 1
was generated by: iGEM to SBOL conversion
owned by: james
owned by: myers
elements: gcggccgcaaggggttcgcgtcagcgggtgttggcgggtgtcggggctggcttaactatgcggcatcagagcagattgtactgagagtgcaccatatgcggtgtgaaataccgcacagatgcgtaaggagaaaataccgcatcaggcgccattcgccattcagctgcgcaactgttgggaagggcgatcggtgcgggcctcttcgctattacgccagctggcgaaagggggatgtgctgcaaggcgattaagttgggtaacgccagggttttcccagtcacgacgttgtaaaacgacggccagtgaattgtaatacgactcactatagggcgaattcgagctcggtacccggggatcccaccgaacgggcgaccacctcgccacgctcgtcgctcagtagcgccagcgccctgcgcaattgcgggcgcacctccaggcgatagcgccggcccgcctcgaagccgtcatagaccacctgctggtagcagttgatctgcaccggctcgccgaagccgccccccccgccgccggaaccgccatagagttcgtactggaagcgcacctccagcacatggcgtcccggagtgacctggaagtagcgcccgtcgctcaaccgctcgccgtccaggcgctcggccagcagggtgttggccggcgcgctgcgcagctcgacccaggccatctgcgggtccggctgcggcagcggtccggcgcagccggcgaggagcagcagcgcgagcgggacgagacgggtgagtggacgcatggggcgggctccggagggtgttcagctcctagcatagcgccctcgccttgcgccgttcagaccttcgcgcagcgcccctcgcggccgcgcgccagttccctgttgtcctggtcgtagagcttcgcccagggacggaagccgatgtgcccggcctccaggcggtagcgctggccggcgctgaagtccttgaacttgaggttgagctggcaatcgcgccagagcgggctgtccacggggccgatgttggtcgggtcgacggtgaactggtagcgcaccgtgagttcgcgggtgccgggatcgacctcgaagtagcgcgtgcggtcccagctcttgtcgtcgacttccacggcggcgagatcggcgtcgggctgggtatcgaggtcgacccaggcgcggttcgggtcgggggtgggcatcagcagtgagcagccgctcaggacgagcaggccaccggcaagcagcagcgtacgcatagaagactccgaagctcctttaacccggccgccatccgtcgcgccttggaaaaacgccttgcgttcctccgcctcgccggatcgcggaccggtgctggtagggcggcgggcggtccgcgtgctgtgctatgttccgcccatgccacgccgccttcgccatccgcttgctgaccttcgactgccccgttgggttccctgcctggcgctgttggcgctgagcggttgctcgaccgtctcctactacgggcaactggccagcggccagttcgccctgctgcgcgcccgcgagccggccgccgcggtgatcgccgacccgcagcgcgacgcgcgcttgcgcgaacgcctggcgaaggcggaaaaggcccggcaattcgccagcgaacgcctcggcctgccggacaaccgcagctatcgcctgtacgccgatatcggccggccctacgtggtatggaacgtgttcgccaccccggagctgtcgctgcagccggtcacccattgcttccccatcgccggctgcgtggcctaccgcggctactacagcgaggccgccgcgcgcgccgaggcggcgcgccagcgggcgctcggcgacgacgtctacgtcggcggggtgcaggcctactcgaccctcggctggttcgacgatccgatcctcagcagcatgctgcgctgggacgacgaacggctggcgaccttgatcttccacgaactggcgcaccagaagttctacctgcgcgacgacaccgccttcaacgaatccttcg…
encoding: naseq.html

iGEM to SBOL conversion
type: Activity
persistent identity: igem2sbol
display id: igem2sbol
version: 1
description: Conversion of the iGEM parts registry to SBOL2.1
owned by: james
owned by: myers
creator: James Alastair McLaughlin
creator: Chris J. Myers
ended at time: 2017-03-06T15:00:00.000Z