BBa_K337005
1
BBa_K337005
hsa-miR-122 Binding site pattern (2BS - additional 10bp Spacer)
2010-10-20T11:00:00Z
2015-05-08T01:12:06Z
http://mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0000421
hsa-miR-122 binding site pattern, consisting of 2 perfect matching binding sites. The binding sites are seperated by a sequence of 40 base pairs, which are innert in terms of miRNA binding. Additionally, first 15bp and last 15bp of the separation sequence is either in front or the end of the whole pattern, to be unconnected to standard restriction sites.
false
false
_461_
0
7259
9
It's complicated
false
The spacer sequences, present between the miRNA binding sites, should have the lowest compatibility to known miRNAs, to minimize unspecific sequence recognition.
false
Adlung L,Al Sabah J,Bayer P,Berrens R,Cristiano E,Flocke L,Kleinsorg S,Kolodziejczyk A,Macias Torre A,Mathur A,Mayilo D,Neumann S,Niopek D,Schad J,Schuhmacher L,Uhlig T,Wu X,Grimm D,Eils R
annotation2091226
1
Spacer 1st half
range2091226
1
63
77
annotation2091227
1
Spacer 1st half
range2091227
1
1
15
annotation2091225
1
Spacer 2nd half
range2091225
1
100
114
annotation2091223
1
Spacer 2nd half
range2091223
1
38
52
annotation2091224
1
addtional 10bp spacer
range2091224
1
53
62
BBa_K337005_sequence
1
cactgaatccaactgcaaacaccattgtcacactccagcatacatggactgcgagaaatagccactgaatccaactgcaaacaccattgtcacactccagcatacatggactgc
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z