BBa_B0014
1
BBa_B0014
double terminator (B0012-B0011)
2003-07-15T11:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
Double terminator consisting of BBa_B0012 and BBa_B0011
false
true
_1_
0
24
7
In stock
false
true
Reshma Shetty
component939303
1
BBa_B0012
component939311
1
BBa_B0011
annotation939311
1
BBa_B0011
range939311
1
50
95
annotation939303
1
BBa_B0012
range939303
1
1
41
BBa_B0011
1
BBa_B0011
LuxICDABEG (+/-)
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Derived from luxICDABEG operon terminator of Vibrio fischeri <genbank>AF170104</genbank>.
Released HQ 2013
Bidirectional transcriptional terminator consisting of a 22 bp stem-loop.</p>
false
false
_1_
0
24
7
In stock
false
<P> <P>In the naturally-occuring sequence there is a mismatch in the stem of the stem loop. This can be corrected via an A->G mutation (at position 40 -- sequence coordinate/not MFOLD coordinate). The above sequence does not reflect this mutation (but the MFOLD image does). This terminator's location cannot be found using some inverted repeat detectors like PALINDROME because it is too short and contains a mismatch. This one was found with the help of Tom Knight. It lies between two coding regions that point towards eachother.<P>
true
Reshma Shetty
annotation1683
1
stem_loop
range1683
1
13
35
annotation7019
1
BBa_B0011
range7019
1
1
46
BBa_K361000
1
Rci
Rci site-specific recombinase
2010-10-23T11:00:00Z
2015-05-08T01:12:12Z
It belongs to integrase family of site-specific recombinase, and it is extracted from muliple inversion systems in R64 plasmid, found in genomic sequence code:AP005147.1
This part will prouce a 384-amino acid Rci site-specific recombinase used in shufflon system, which is a site-specific DNA recombination between two specific repeat sites as recognition.
After this recombinase is being expressed, it can alter the DNA sequence being inserted randomly with the specific repeat sites originally to become an unknown sequence.
false
true
_476_
0
6123
9
It's complicated
true
The gene is come from muliple inversion systems in R64 plasmid and there is no further modification.
Reports have shown that some modification of the gene will lead to deletion some parts of DNA sequence during recombination process.
false
Jacky, Fong Chuen, Loo
annotation2095181
1
Rci recombinase
range2095181
1
1
1155
BBa_S04509
1
BBa_S04509
R0010:B0034
2010-10-19T11:00:00Z
2015-05-08T01:14:41Z
Released HQ 2013
false
false
_9_
0
6123
9
In stock
false
false
Jacky, Fong Chuen, Loo
component2090735
1
BBa_R0010
component2090743
1
BBa_B0034
annotation2090735
1
BBa_R0010
range2090735
1
1
200
annotation2090743
1
BBa_B0034
range2090743
1
209
220
BBa_B0012
1
BBa_B0012
TE from coliphageT7
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>.
Released HQ 2013
Transcription terminator for the <i>E.coli</i> RNA polymerase.
false
false
_1_
0
24
7
In stock
false
<P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator.
false
Reshma Shetty
annotation7020
1
BBa_B0012
range7020
1
1
41
annotation1687
1
stop
range1687
1
34
34
annotation1690
1
polya
range1690
1
28
41
annotation1686
1
T7 TE
range1686
1
8
27
BBa_S04524
1
BBa_S04524
K361000:B0014
2010-10-23T11:00:00Z
2015-05-08T01:14:41Z
false
false
_9_
0
6123
9
It's complicated
false
false
Jacky, Fong Chuen, Loo
component2095183
1
BBa_K361000
component2095190
1
BBa_B0014
annotation2095190
1
BBa_B0014
range2095190
1
1164
1258
annotation2095183
1
BBa_K361000
range2095183
1
1
1155
BBa_R0010
1
LacI
promoter (lacI regulated)
2003-01-31T12:00:00Z
2015-05-08T01:14:14Z
The Plac insert was PCR'd from the MG1655 strain of E.coli K12.
Released HQ 2013
Inverting regulatory region controlled by LacI (<bb_part>BBa_C0010</bb_part>, <bb_part>BBa_C0011</bb_part>, etc.) <p> The pLac regulatory region is a 243 base-pair sequence with standard BioBrick prefix and suffix sections on its ends. It contains two protein binding sites: CAP, which is generally present in E.coli and is assocciated with cell health and availability of glucose., and LacI, the Lac inhibitor <bb_part>BBa_C0010</bb_part> which binds in an dimerized cooperative manner to inhibit the transcription of the protein that follows. In the presence of lactose or IPTG, an analog of lactose, LacI is unable to correctly bind and inhibit transcription. This allows <bb_part>BBa_R0010</bb_part> to be used as a inverter or as a detector of lactose or IPTG.
false
true
_1_
0
24
7
In stock
false
<P> <P><P> LacI binds to this regulator. This part is incompatible with species containing active LacI coding regions. Lactose and IPTG disable the operation of LacI and this regulator. This part is incompatible with environments containing lactose or lactose analogs.
true
annotation1961226
1
LacI binding site
range1961226
1
166
200
annotation1961223
1
CAP binding site
range1961223
1
89
126
annotation1961224
1
-35
range1961224
1
137
142
annotation1961227
1
start
range1961227
1
173
173
annotation1961222
1
BBa_R0010
range1961222
1
1
200
annotation1961221
1
end of LacI coding region (inactive)
range1961221
1
1
88
annotation1961225
1
-10
range1961225
1
161
166
BBa_K361011
1
BBa_K361011
Rci recombinase system
2010-10-23T11:00:00Z
2015-05-08T01:12:12Z
The promotor is come from lacI regulated one: BBa_R0010
The ribosome binding site is come from the defines RBS efficiency equal to one : BBa_B0034
The terminator is come from a doble terminator with bidirectional termination: BBa_B0014
This is the protein genertors of Rci site-specific recombinase BBa_K361000, which is being linked with a promotor and a ribosome binding site in front of it, a double terminator after it.
false
false
_476_
0
6123
9
It's complicated
true
This is the optimal system for Rci site-specific recombinase production.
false
Jacky, Fong Chuen, Loo
component2095272
1
BBa_S04524
component2095262
1
BBa_S04509
annotation2095272
1
BBa_S04524
range2095272
1
227
1484
annotation2095262
1
BBa_S04509
range2095262
1
1
220
BBa_B0034
1
BBa_B0034
RBS (Elowitz 1999) -- defines RBS efficiency
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
RBS based on Elowitz repressilator.
false
true
_1_
0
24
7
In stock
false
Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS.
Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a>
true
Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003.
annotation23325
1
conserved
range23325
1
5
8
BBa_R0010_sequence
1
caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacaca
BBa_B0014_sequence
1
tcacactggctcaccttcgggtgggcctttctgcgtttatatactagagagagaatataaaaagccagattattaatccggcttttttattattt
BBa_B0034_sequence
1
aaagaggagaaa
BBa_S04509_sequence
1
caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaa
BBa_K361011_sequence
1
caatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactggaaagcgggcagtgagcgcaacgcaattaatgtgagttagctcactcattaggcaccccaggctttacactttatgcttccggctcgtatgttgtgtggaattgtgagcggataacaatttcacacatactagagaaagaggagaaatactagatgccgtctccacgcatccgtaaaatgtccctgtcacgcgcactggataagtacctgaaaacagtttctgttcacaagaaagggcatcaacaggagttttaccggagcaatgttatcaagcgatatcccattgcccttcggaatatggacgaaataacaaccgttgatattgctacatacagagacgttcgtttagcagaaatcaacccccgaacgggtaaacccattacaggtaatactgtacgtcttgaactcgcccttctgtcatctctgttcaatattgctcgtgttgaatggggaacctgtcgtactaacccggttgaactggttcgcaagccgaaagtatcctcgggacgagatcgccggctaacgtcttcagaagaacgtcgcctttctcgctatttccgcgaaaaaaatctgatgttgtatgtcattttccatcttgcccttgagacagccatgcggcagggcgaaatactggccttacgttgggagcacattgatttgcgccacggtgtggctcatttacctgaaaccaaaaacggtcactcacgggatgttcctctgtccagacgtgcccgtaactttcttcagatgatgcccgttaatctccacggcaatgtttttgattacaccgcatccggctttaaaaatgcctggagaatagccacacaacgacttcgcatcgaggacctgcattttcacgatctacggcatgaagcaataagccgcttcttcgaactgggtagcctgaatgtaatggagattgctgcaatatcaggacatcgttccatgaatatgctgaaacggtatactcatcttcgtgcatggcaactggtcagtaagcttgatgcccgccggcggcagacacaaaaagtggcagcatggtttgtgccgtatcctgcccatatcacgaccatcgatgaagaaaatgggcagaaagcgcatcgtattgagatcggtgattttgataaccttcacgtcactgccacaacgaaagaggaagcagttcaccgcgccagtgaggttttgttgcgtacactggccattgcagcacagaaaggcgaacgtgtcccatctcccggagcgttacctgttaacgaccctgattacattatgatttgccctctgaacccgggcagcaccccgctgtaatactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagagagaatataaaaagccagattattaatccggcttttttattattt
BBa_K361000_sequence
1
atgccgtctccacgcatccgtaaaatgtccctgtcacgcgcactggataagtacctgaaaacagtttctgttcacaagaaagggcatcaacaggagttttaccggagcaatgttatcaagcgatatcccattgcccttcggaatatggacgaaataacaaccgttgatattgctacatacagagacgttcgtttagcagaaatcaacccccgaacgggtaaacccattacaggtaatactgtacgtcttgaactcgcccttctgtcatctctgttcaatattgctcgtgttgaatggggaacctgtcgtactaacccggttgaactggttcgcaagccgaaagtatcctcgggacgagatcgccggctaacgtcttcagaagaacgtcgcctttctcgctatttccgcgaaaaaaatctgatgttgtatgtcattttccatcttgcccttgagacagccatgcggcagggcgaaatactggccttacgttgggagcacattgatttgcgccacggtgtggctcatttacctgaaaccaaaaacggtcactcacgggatgttcctctgtccagacgtgcccgtaactttcttcagatgatgcccgttaatctccacggcaatgtttttgattacaccgcatccggctttaaaaatgcctggagaatagccacacaacgacttcgcatcgaggacctgcattttcacgatctacggcatgaagcaataagccgcttcttcgaactgggtagcctgaatgtaatggagattgctgcaatatcaggacatcgttccatgaatatgctgaaacggtatactcatcttcgtgcatggcaactggtcagtaagcttgatgcccgccggcggcagacacaaaaagtggcagcatggtttgtgccgtatcctgcccatatcacgaccatcgatgaagaaaatgggcagaaagcgcatcgtattgagatcggtgattttgataaccttcacgtcactgccacaacgaaagaggaagcagttcaccgcgccagtgaggttttgttgcgtacactggccattgcagcacagaaaggcgaacgtgtcccatctcccggagcgttacctgttaacgaccctgattacattatgatttgccctctgaacccgggcagcaccccgctgtaa
BBa_B0011_sequence
1
agagaatataaaaagccagattattaatccggcttttttattattt
BBa_B0012_sequence
1
tcacactggctcaccttcgggtgggcctttctgcgtttata
BBa_S04524_sequence
1
atgccgtctccacgcatccgtaaaatgtccctgtcacgcgcactggataagtacctgaaaacagtttctgttcacaagaaagggcatcaacaggagttttaccggagcaatgttatcaagcgatatcccattgcccttcggaatatggacgaaataacaaccgttgatattgctacatacagagacgttcgtttagcagaaatcaacccccgaacgggtaaacccattacaggtaatactgtacgtcttgaactcgcccttctgtcatctctgttcaatattgctcgtgttgaatggggaacctgtcgtactaacccggttgaactggttcgcaagccgaaagtatcctcgggacgagatcgccggctaacgtcttcagaagaacgtcgcctttctcgctatttccgcgaaaaaaatctgatgttgtatgtcattttccatcttgcccttgagacagccatgcggcagggcgaaatactggccttacgttgggagcacattgatttgcgccacggtgtggctcatttacctgaaaccaaaaacggtcactcacgggatgttcctctgtccagacgtgcccgtaactttcttcagatgatgcccgttaatctccacggcaatgtttttgattacaccgcatccggctttaaaaatgcctggagaatagccacacaacgacttcgcatcgaggacctgcattttcacgatctacggcatgaagcaataagccgcttcttcgaactgggtagcctgaatgtaatggagattgctgcaatatcaggacatcgttccatgaatatgctgaaacggtatactcatcttcgtgcatggcaactggtcagtaagcttgatgcccgccggcggcagacacaaaaagtggcagcatggtttgtgccgtatcctgcccatatcacgaccatcgatgaagaaaatgggcagaaagcgcatcgtattgagatcggtgattttgataaccttcacgtcactgccacaacgaaagaggaagcagttcaccgcgccagtgaggttttgttgcgtacactggccattgcagcacagaaaggcgaacgtgtcccatctcccggagcgttacctgttaacgaccctgattacattatgatttgccctctgaacccgggcagcaccccgctgtaatactagagtcacactggctcaccttcgggtgggcctttctgcgtttatatactagagagagaatataaaaagccagattattaatccggcttttttattattt
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z