BBa_K415202
1
BBa_K415202
cymR Repressor Protein
2010-08-19T11:00:00Z
2015-05-08T01:12:27Z
CymR was derived from the organism Pseudomonas Putida. The copy of cymR used in the construction of BBa_K415202 was generously donated by Noah Davidsohn.
The cymR repressor tightly and efficiently binds the cmt operator. In conjunction with part
BBa_K415200, this repressor may be used to create an inverter or similar logical circuitry. cymR
changes conformation upon induction with cumate (isopropylbenozate), and may be used in a
manner similar to the lacI/IPTG system.
The cymR repressor appears to bind the complementary cmt operator more efficiently than
lac repressor binds the lac operator, according to Choi, et al. in a recent (as of 2010) paper titled, "A novel, versatile, and tightly regulated expression system for E. Coli strains."
true
false
_525_
0
6719
9
Discontinued
false
This repressor required site-directed mutagenesis of nucleotide 132 to a G in order to remove
a PstI cut site.
false
Grant Robinson
BBa_B0034
1
BBa_B0034
RBS (Elowitz 1999) -- defines RBS efficiency
2003-01-31T12:00:00Z
2015-08-31T04:07:20Z
Released HQ 2013
RBS based on Elowitz repressilator.
false
true
_1_
0
24
7
In stock
false
Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS.
Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a>
true
Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003.
annotation23325
1
conserved
range23325
1
5
8
BBa_K415204
1
BBa_K415204
B0034 : cymR Repressor Protein (Strong cymR Translational Unit)
2010-08-19T11:00:00Z
2015-05-08T01:12:27Z
This part consists of BioBricks BBa_B0034, a strong RBS, and BBa_K415202, the cymR repressor.
This is a translational unit consisting of a strong RBS and the cymR repressor protein; cymR
binds tightly and efficiently to the cmt operator, but changes conformation and detaches
from DNA when it forms a complex with cumate (isopropybenozate). This part allows for
strong translation of mature RNA containing the cymR coding sequence.
true
false
_525_
0
6719
9
Discontinued
false
No design considerations to note.
false
Grant Robinson
component2078444
1
BBa_K415202
component2078443
1
BBa_B0034
annotation2078443
1
BBa_B0034
range2078443
1
1
12
annotation2078444
1
BBa_K415202
range2078444
1
19
630
BBa_K415202_sequence
1
atgagtccaaagagaagaacacaggcagagcgcgcaatggagacccagggcaagttgattgcagcggccctgggggttttacgggaaaaaggttacgcgggattccggatcgcagatgtgcccggtgctgcgggtgtctcgagaggagcgcagagccatcatttcccgacaaagcttgagcttctgcttgccacttttgaatggctttacgaacagatcaccgaacgcagtcgggctcgattagcgaaattgaagccagaggatgacgtcatccagcaaatgctggacgacgccgccgaatttttcctcgacgatgacttctctatcagccttgatttgattgtggctgccgaccgggatccagcgttacgcgagggtattcagcgcacggtagagaggaatcggtttgtcgtcgaggatatgtggcttggtgttctggtgagccgtggtctttcgcgtgatgatgcagaagatatcctttggttgatattcaattcggtgcgtgggcttgctgttcgtagcctatggcagaaggacaaagaacgctttgagcgtgtcaggaactcgacactcgaaattgcgcgagagcggtacgcgaaattcaagcgctag
BBa_B0034_sequence
1
aaagaggagaaa
BBa_K415204_sequence
1
aaagaggagaaatactagatgagtccaaagagaagaacacaggcagagcgcgcaatggagacccagggcaagttgattgcagcggccctgggggttttacgggaaaaaggttacgcgggattccggatcgcagatgtgcccggtgctgcgggtgtctcgagaggagcgcagagccatcatttcccgacaaagcttgagcttctgcttgccacttttgaatggctttacgaacagatcaccgaacgcagtcgggctcgattagcgaaattgaagccagaggatgacgtcatccagcaaatgctggacgacgccgccgaatttttcctcgacgatgacttctctatcagccttgatttgattgtggctgccgaccgggatccagcgttacgcgagggtattcagcgcacggtagagaggaatcggtttgtcgtcgaggatatgtggcttggtgttctggtgagccgtggtctttcgcgtgatgatgcagaagatatcctttggttgatattcaattcggtgcgtgggcttgctgttcgtagcctatggcagaaggacaaagaacgctttgagcgtgtcaggaactcgacactcgaaattgcgcgagagcggtacgcgaaattcaagcgctag
igem2sbol
1
iGEM to SBOL conversion
Conversion of the iGEM parts registry to SBOL2.1
Chris J. Myers
James Alastair McLaughlin
2017-03-06T15:00:00.000Z