BBa_K809403 1 ROP+P ROP+Promoter in mitochondria 2012-09-23T11:00:00Z 2015-05-08T01:13:27Z 1. Brekasis, D. and M. S. Paget (2003). "A novel sensor of NADH/NAD+ redox poise in Streptomyces coelicolor A3(2)." EMBO J 22(18): 4856-4865. 2. Deshpande, A. P. and S. S. Patel (2012). "Mechanism of transcription initiation by the yeast mitochondrial RNA polymerase." Biochim Biophys Acta. 3. http://regulondb.ccg.unam.mx/ This is regulatory sequence which can be repressed by binding of REX on ROP site. false false _1066_ 0 12018 9 Not in stock false With different place of ROP and promoter, the effect of REX binding on ROP might differs. false Xiaopeng Xu BBa_K809009 1 OLI1 RBS RBS sequence of yeast mitochondrial gene OLI1 2012-09-23T11:00:00Z 2015-05-08T01:13:26Z This is obtained from Saccharomyces cerevisiae S288C mito-chromosome region. http://www.yeastgenome.org/ This is the RBS region for OLI1 gene. It is selected from Yeast mito-chromosome, and we want to test it in our experiment. false false _1066_ 0 12018 9 Not in stock false The sequence between the last ATG codon and CDS on the 3'UTR DNA sequence is believed to contain RBS. With some modifications, we made those sequences BioBricks. false Xiaopeng Xu BBa_K809504 1 BBa_K809504 ROP+P+OLI1 RBS+mtGFP+COX3 terminator 2012-09-23T11:00:00Z 2015-05-08T01:13:27Z http://partsregistry.org/wiki/index.php?title=Part:BBa_K809403 http://partsregistry.org/wiki/index.php?title=Part:BBa_K809001 http://partsregistry.org/wiki/index.php?title=Part:BBa_K809005 This biobrick is to produce GFP with the control of REX binding on ROP site. false false _1066_ 0 12018 9 Not in stock false All parts should be correctly linked without frame shift and Restriction Enzyme cutting site. false Xiaopeng Xu component2196292 1 BBa_K809001 component2196289 1 BBa_K809403 component2196294 1 BBa_K809005 component2196290 1 BBa_K809009 annotation2196292 1 BBa_K809001 range2196292 1 170 886 annotation2196294 1 BBa_K809005 range2196294 1 895 943 annotation2196289 1 BBa_K809403 range2196289 1 1 43 annotation2196290 1 BBa_K809009 range2196290 1 50 163 BBa_K809001 1 mtGFP Mitochondrial GFP 2012-09-19T11:00:00Z 2015-05-08T01:13:26Z .. Mitochondrial GFP false false _1066_ 0 11943 9 It's complicated true .. false Qiwu XU annotation2188517 1 mt gfp range2188517 1 1 714 BBa_K809005 1 COX3 termi Terminator of Yeast mitochondrial gene COX3 2012-09-22T11:00:00Z 2015-05-08T01:13:26Z This is obtained from Saccharomyces cerevisiae S288C mito-chromosome region. http://www.yeastgenome.org/ This is the terminator region for COX3 gene. It is selected from Yeast mito-chromosome, and we want to test it in our experiment. false false _1066_ 0 12018 9 Not in stock false We modelled the RNA secondary structure of COX3 3'UTR region, and found that the secondary structure of this region is very similar to bacterial terminator sequence. false Xiaopeng Xu annotation2194193 1 stem_loop range2194193 1 16 34 BBa_K809403_sequence 1 ttgcttgtgaatgtgaacgcgttcacaagcgtatataagtaat BBa_K809009_sequence 1 atgttaattatatataatatatttatatataattatatatatatatataaataataataaatatatatataatataaaaataagaatagattaaatatttaataaataaatatt BBa_K809504_sequence 1 ttgcttgtgaatgtgaacgcgttcacaagcgtatataagtaattactagatgttaattatatataatatatttatatataattatatatatatatataaataataataaatatatatataatataaaaataagaatagattaaatatttaataaataaatatttactagatgtcaaaaggtgaagaattattcactggagtagtacctatcttagtagaattagatggtgatgtaaatggtcataaattctcagtatcaggtgaaggtgaaggtgatgctacatatggtaaattaacattaaaattcatctgtacaacaggtaaattacctgtaccttgacctacattagtaacaacattctcatatggagtacaatgtttctcaagatatcctgatcatatgaaacaacatgatttcttcaaatcagcaatgcctgaaggttacgtacaagaaagaacaatcttcttcaaagatgatggtaattataaaacaagagctgaagtaaaattcgaaggtgatacattagtaaatagaatcgagttaaaaggtatcgatttcaaagaagatggtaatatcttaggtcataaattagaatataattataattcacataatgtatatatcatggctgataaacaaaaaaatggtatcaaagtaaatttcaaaatcagacataatatcgaagacggttcagtacaattagcagatcattatcaacaaaatacacctatcggtgatggtcctgtattattacctgataatcattacttaagtacacaatcagctttatcaaaagatcctaatgaaaaaagagatcatatggtattattagaatttgtaacagctgctggtatcacacatggtatggatgaattatataaataatactagagaaaactcctaacggggttcccgcgaagcgggaactaataataatataat BBa_K809001_sequence 1 atgtcaaaaggtgaagaattattcactggagtagtacctatcttagtagaattagatggtgatgtaaatggtcataaattctcagtatcaggtgaaggtgaaggtgatgctacatatggtaaattaacattaaaattcatctgtacaacaggtaaattacctgtaccttgacctacattagtaacaacattctcatatggagtacaatgtttctcaagatatcctgatcatatgaaacaacatgatttcttcaaatcagcaatgcctgaaggttacgtacaagaaagaacaatcttcttcaaagatgatggtaattataaaacaagagctgaagtaaaattcgaaggtgatacattagtaaatagaatcgagttaaaaggtatcgatttcaaagaagatggtaatatcttaggtcataaattagaatataattataattcacataatgtatatatcatggctgataaacaaaaaaatggtatcaaagtaaatttcaaaatcagacataatatcgaagacggttcagtacaattagcagatcattatcaacaaaatacacctatcggtgatggtcctgtattattacctgataatcattacttaagtacacaatcagctttatcaaaagatcctaatgaaaaaagagatcatatggtattattagaatttgtaacagctgctggtatcacacatggtatggatgaattatataaataa BBa_K809005_sequence 1 aaaactcctaacggggttcccgcgaagcgggaactaataataatataat igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z