BBa_B0034 1 BBa_B0034 RBS (Elowitz 1999) -- defines RBS efficiency 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Released HQ 2013 RBS based on Elowitz repressilator. false true _1_ 0 24 7 In stock false Varies from -6 to +1 region from original sequence to accomodate BioBricks suffix. <p>No secondary structures are formed in the given RBS region. Users should check for secondary structures induced in the RBS by upstream and downstream elements in the +50 to -50 region, as such structures will greatly affect the strength of the RBS. Contact info for this part: <a href="mailto:(bchow@media.mit.edu)">Brian Chow</a> true Vinay S Mahajan, Voichita D. Marinescu, Brian Chow, Alexander D Wissner-Gross and Peter Carr IAP, 2003. annotation23325 1 conserved range23325 1 5 8 BBa_K137005 1 pabA pabA (from pABA synthesis) 2008-06-19T11:00:00Z 2015-05-08T01:10:08Z L.lactis genome pabA is a gene involved in para-aminobenzoic acid (pABA) synthesis from chorismate. PABA is necessary for the synthesis of folate. false false _187_ 0 2987 9 It's complicated false We decided to clone the pABA synthesis genes separately (even though they reside side by side) because L.lactis uses start codons (ttg) that E.coli cannot, and so we need to change the start codon for pabB to atg. false Victoria Hsiao BBa_B0010 1 BBa_B0010 T1 from E. coli rrnB 2003-11-19T12:00:00Z 2015-08-31T04:07:20Z Transcriptional terminator consisting of a 64 bp stem-loop. false false _1_ 0 24 7 In stock false true Randy Rettberg annotation7018 1 BBa_B0010 range7018 1 1 80 annotation4184 1 stem_loop range4184 1 12 55 BBa_K137006 1 BBa_K137006 pabB (from pABA synthesis) 2008-06-19T11:00:00Z 2015-05-08T01:10:08Z L.lactis genome PabB from L.lactis is a fusion gene of both the usual pabB and pabC in the pABA synthesis pathway from chorismate. false false _187_ 0 2987 9 It's complicated false The start codon of pabB in L.lactis is TTG, which cannot be used in E.coli. So we designed the primer such that the first T was omitted and the A from the xba1 primer make an ATG start codon. false Victoria Hsiao annotation1971718 1 Changed T to A range1971718 1 1 1 BBa_B0012 1 BBa_B0012 TE from coliphageT7 2003-01-31T12:00:00Z 2015-08-31T04:07:20Z Derived from the TE terminator of T7 bacteriophage between Genes 1.3 and 1.4 <genbank>V01146</genbank>. Released HQ 2013 Transcription terminator for the <i>E.coli</i> RNA polymerase. false false _1_ 0 24 7 In stock false <P> <P>Suggested by Sri Kosuri and Drew Endy as a high efficiency terminator. The 5' end cutoff was placed immediately after the TAA stop codon and the 3' end cutoff was placed just prior to the RBS of Gene 1.4 (before AAGGAG).<P> Use anywhere transcription should be stopped when the gene of interest is upstream of this terminator. false Reshma Shetty annotation7020 1 BBa_B0012 range7020 1 1 41 annotation1687 1 stop range1687 1 34 34 annotation1690 1 polya range1690 1 28 41 annotation1686 1 T7 TE range1686 1 8 27 BBa_K909015 1 BBa_K909015 p-ABA overproduction composite without promoter 2012-09-21T11:00:00Z 2015-05-08T01:13:45Z S04039, K137055 Released HQ 2013 PABA is derived from the aromatic branch point precursor chorismate in two steps. Aminodeoxychorismate (ADC) synthase converts chorismate and glutamine to ADC and glutamate. The conversion of chorismate and glutamine to ADC and glutamate determines the rate and therefore overexpression of ADC synthase leads to overproduction of pABA. ADC synthase is composed of two subunits, PabA and PabB. Finally ADC lyase removes pyruvate from ADC, aromatizes the ring, and generates PABA. false false _1174_ 0 14088 9 In stock false pabB and pabA constitute an operon that can be controled by any promoter. false Deborah Huber component2193606 1 BBa_B0034 component2193609 1 BBa_B0034 component2193610 1 BBa_K137005 component2193613 1 BBa_B0012 component2193607 1 BBa_K137006 component2193611 1 BBa_B0010 annotation2193610 1 BBa_K137005 range2193610 1 1935 2519 annotation2193611 1 BBa_B0010 range2193611 1 2528 2607 annotation2193607 1 BBa_K137006 range2193607 1 19 1908 annotation2193606 1 BBa_B0034 range2193606 1 1 12 annotation2193613 1 BBa_B0012 range2193613 1 2616 2656 annotation2193609 1 BBa_B0034 range2193609 1 1917 1928 BBa_B0010_sequence 1 ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctc BBa_K137006_sequence 1 atgaaggaatttataataaaaaatacggatatttggaaaattttcctaaaatattatcggtcagatgaagaaattgtttttttacatagtagtcaggtgaccgaaaatgagcattatagtattttagctcataaaccttataaaaaggtttcaaaatataagggtcaagtgttttttaatggtgaaaaaaagaagttcaattttttagatgcggtagatttgctgaaggatgagagagttgaacgacctaaaaattggcctttttatccagaattattgggttttgtaagttatgagcaagatccggcttgttttgcagcttatgatgaagttttactttttgaccatagaacaaaactgttacgtgtcgtgcaatttgaacaaactgatggccaatattggctgactgaatcggaagaaattgaagtggattcagagattgagttcgatgttcagaatggcataggggctgtttttattgaccaaacgaggcaagaatatattgcttcaataaaaaaaatacaagattatatgaaggctggcgatatttatgttgccaatttgacgcaacaatttgaaatttggtccgatcaaaaacctattgatgtttttaagaaaacaaggaaacaaattcctgctcctttctcatcatttttacaatatcctgaatggaaaatgacgcaaatttcaagttctgttgaacgctttgtttctattcataatggagcattaatttcaaaacccattaaaggaacaattgccagaggagaaaatgttgtagctgatagattacaaaagaaaatactttccgacagtagtaaagaacggtctgagttactgatggtgacggatttattgcgtaatgatattgcccgaattagtcaacctttttctttgtctgtccctaaatttgcagaaattgaaactttttctcatgttcatcaactggtgacttcaataaaaagtagaattaaagaagatttgactttttcagaatttatgacggctttatttccgggaggttcaatcacaggtacacctaagaagcgggcaatggagattattaaggaagttgaaaaacaacctagaggaatttatacagggatgcagggttggttaagtcgagaaatggatttggatatgaacatcgtgattcggacattagttcatgacggtgagcattatcagcttggtgtaggcggtggaattacgttcgagagcgaagcagaagcagagttttcagagattttactaaaagcaaaaccctttttagatatattaggcctgaaagatgttccaagtattttatttacaacaggccttgttaaaaatggtgaattgttaaatttagagggtcatgtcaatcgcttgaaaaaacaataccatcatgcagatttggaagaaaaattgagaatatttgcccaaaaggttactgacggggttttacgtatcagtactgacggagattctttgacccctgggattcgtcagttgacccattcaaatgaggcctatcgagttaaactgtcgtcaattaatgacaaacctagtcttttgtctaactttaaactttcaggcccagattttcaaaaggtctttcgtcaggaagtcttagaagcgaaaaaagaagggtttcaagatattctatttcatacagatggtttgatcagtgaattatcaatcggaaattttgtggcaaaaaaggggaatcagtacgaaacgccagccaaatatgctctaaaaggaacttttttagatttatttgcgaaaaatcatacgctaatatataaagatattgcgatttctgatttgaaaacttacgatcgtttttatatgacaaatgctgtcagaggattagttgaaataaaaattgatggaatttcctaataa BBa_B0034_sequence 1 aaagaggagaaa BBa_K137005_sequence 1 atgaaattgctattaattgataattatgattcttttacttatttgcttgcacagtattttgaggaattagattgtagtgtaacagtggttaatgaccaagataaaatgagtcagaaaattagaatttctccggattttatttgtgaaaattatgatgcgattatcatttctccaggtccaaaaacaccaaaagaagccgtttttagtagggatgtagttcaactatacgctggaaaaattcctatgttaggaatttgcttgggtcagcaagtcattgctgaatgttttggaggaaatgttgttcttggtgagaggccaatgcatggaaaaatttctgtcattcgtcataattatcaaggaatttttaaaggacttccacaaaatttgaaagttgcacgttatcattcgttgattgtcgataaactacctgatgattttgaaattgatgcgcagagtgaggatggtgttattcaggccattcatcagccaaaattaaaattgtgggctttacaatttcacccagaaagtttagttactgaatatggtcatgaaatgttaaataattttttgaaagtggtgtaataa BBa_B0012_sequence 1 tcacactggctcaccttcgggtgggcctttctgcgtttata BBa_K909015_sequence 1 aaagaggagaaatactagatgaaggaatttataataaaaaatacggatatttggaaaattttcctaaaatattatcggtcagatgaagaaattgtttttttacatagtagtcaggtgaccgaaaatgagcattatagtattttagctcataaaccttataaaaaggtttcaaaatataagggtcaagtgttttttaatggtgaaaaaaagaagttcaattttttagatgcggtagatttgctgaaggatgagagagttgaacgacctaaaaattggcctttttatccagaattattgggttttgtaagttatgagcaagatccggcttgttttgcagcttatgatgaagttttactttttgaccatagaacaaaactgttacgtgtcgtgcaatttgaacaaactgatggccaatattggctgactgaatcggaagaaattgaagtggattcagagattgagttcgatgttcagaatggcataggggctgtttttattgaccaaacgaggcaagaatatattgcttcaataaaaaaaatacaagattatatgaaggctggcgatatttatgttgccaatttgacgcaacaatttgaaatttggtccgatcaaaaacctattgatgtttttaagaaaacaaggaaacaaattcctgctcctttctcatcatttttacaatatcctgaatggaaaatgacgcaaatttcaagttctgttgaacgctttgtttctattcataatggagcattaatttcaaaacccattaaaggaacaattgccagaggagaaaatgttgtagctgatagattacaaaagaaaatactttccgacagtagtaaagaacggtctgagttactgatggtgacggatttattgcgtaatgatattgcccgaattagtcaacctttttctttgtctgtccctaaatttgcagaaattgaaactttttctcatgttcatcaactggtgacttcaataaaaagtagaattaaagaagatttgactttttcagaatttatgacggctttatttccgggaggttcaatcacaggtacacctaagaagcgggcaatggagattattaaggaagttgaaaaacaacctagaggaatttatacagggatgcagggttggttaagtcgagaaatggatttggatatgaacatcgtgattcggacattagttcatgacggtgagcattatcagcttggtgtaggcggtggaattacgttcgagagcgaagcagaagcagagttttcagagattttactaaaagcaaaaccctttttagatatattaggcctgaaagatgttccaagtattttatttacaacaggccttgttaaaaatggtgaattgttaaatttagagggtcatgtcaatcgcttgaaaaaacaataccatcatgcagatttggaagaaaaattgagaatatttgcccaaaaggttactgacggggttttacgtatcagtactgacggagattctttgacccctgggattcgtcagttgacccattcaaatgaggcctatcgagttaaactgtcgtcaattaatgacaaacctagtcttttgtctaactttaaactttcaggcccagattttcaaaaggtctttcgtcaggaagtcttagaagcgaaaaaagaagggtttcaagatattctatttcatacagatggtttgatcagtgaattatcaatcggaaattttgtggcaaaaaaggggaatcagtacgaaacgccagccaaatatgctctaaaaggaacttttttagatttatttgcgaaaaatcatacgctaatatataaagatattgcgatttctgatttgaaaacttacgatcgtttttatatgacaaatgctgtcagaggattagttgaaataaaaattgatggaatttcctaataatactagagaaagaggagaaatactagatgaaattgctattaattgataattatgattcttttacttatttgcttgcacagtattttgaggaattagattgtagtgtaacagtggttaatgaccaagataaaatgagtcagaaaattagaatttctccggattttatttgtgaaaattatgatgcgattatcatttctccaggtccaaaaacaccaaaagaagccgtttttagtagggatgtagttcaactatacgctggaaaaattcctatgttaggaatttgcttgggtcagcaagtcattgctgaatgttttggaggaaatgttgttcttggtgagaggccaatgcatggaaaaatttctgtcattcgtcataattatcaaggaatttttaaaggacttccacaaaatttgaaagttgcacgttatcattcgttgattgtcgataaactacctgatgattttgaaattgatgcgcagagtgaggatggtgttattcaggccattcatcagccaaaattaaaattgtgggctttacaatttcacccagaaagtttagttactgaatatggtcatgaaatgttaaataattttttgaaagtggtgtaataatactagagccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctactagagtcacactggctcaccttcgggtgggcctttctgcgtttata igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z