BBa_K165002 1 BBa_K165002 Kozak sequence (yeast RBS) 2008-10-25T11:00:00Z 2015-05-08T01:10:55Z - Released HQ 2013 The kozak sequence acts as a eukaryotic RBS. It is cloned directly between a promoter and coding region. false false _267_ 0 2512 58 In stock false - false John Szymanski BBa_I766555 1 BBa_I766555 pCyc (Medium) Promoter 2007-08-15T11:00:00Z 2015-08-31T04:08:10Z Endogenous promoter for Cytochrome c Mid-expression level constitutive promoter in yeast false false _155_ 0 1931 9 Not in stock false none false Nili Sommovilla BBa_M45175 1 BBa_M45175 Coding region, Metridia longa secreted luciferase protein 2016-04-12T11:00:00Z 2016-04-15T11:00:08Z Metridia longa genome Coding region of Metridia longa secreted luciferase protein. (For class project use.) false false _1855_ 31353 31353 9 false None false Jay Barlow annotation2478631 1 Start codon range2478631 1 1 3 annotation2478633 1 Coding sequence range2478633 1 1 660 annotation2478632 1 Stop codon (added) range2478632 1 658 660 BBa_M45188 1 BBa_M45188 Rec A 2016-04-10T11:00:00Z 2016-04-20T09:42:58Z SOS system of E.coli it is a promoter for the detection of DNA disruption false false _1855_ 31353 30675 9 false None false Wei Zhang BBa_M45178 1 BBa_M45178 Composite radiation biosensor 2016-04-19T11:00:00Z 2016-04-22T04:20:32Z Composite of synthetic analogs, eukaryotic and prokaryotic promoters, and eukaryotic coding sequences. (For class project) A composite device that employs the LexA/RecA system as an ionizing radiation biosensor, triggering luminescence response from Metridia longa luciferase and odor response from lysine decarboxylase. false false _1855_ 31353 31353 9 false RBS and terminator structures added. false Jay Barlow component2479131 1 BBa_M45176 component2479135 1 BBa_M45188 component2479134 1 BBa_K678019 component2479140 1 BBa_M45175 component2479126 1 BBa_M45189 component2479122 1 BBa_I766555 component2479123 1 BBa_K165002 component2479145 1 BBa_M45172 component2479127 1 BBa_K165002 component2479141 1 BBa_K165002 component2479148 1 BBa_K678019 component2479136 1 BBa_K165002 annotation2479145 1 BBa_M45172 range2479145 1 3536 5686 annotation2479123 1 BBa_K165002 range2479123 1 253 270 annotation2479148 1 BBa_K678019 range2479148 1 5695 5927 annotation2479122 1 BBa_I766555 range2479122 1 1 244 annotation2479126 1 BBa_M45189 range2479126 1 277 882 annotation2479141 1 BBa_K165002 range2479141 1 3512 3529 annotation2479131 1 BBa_M45176 range2479131 1 915 1505 annotation2479140 1 BBa_M45175 range2479140 1 2844 3503 annotation2479136 1 BBa_K165002 range2479136 1 2820 2837 annotation2479134 1 BBa_K678019 range2479134 1 1514 1746 annotation2479135 1 BBa_M45188 range2479135 1 1753 2811 annotation2479127 1 BBa_K165002 range2479127 1 891 908 BBa_M45189 1 BBa_M45189 Lex A 2016-04-10T11:00:00Z 2016-04-22T11:04:14Z SOS system of E.coli it is a repressor of Rec A protein false false _1855_ 30675 30675 9 false None false Wei Zhang annotation2479120 1 Stop codon range2479120 1 604 606 annotation2479119 1 Start codon range2479119 1 1 3 BBa_M45172 1 BBa_M45172 cadA gene for Lysine decarboxylase 2016-04-11T11:00:00Z 2016-04-15T03:37:00Z From E.coli (K12)cds. Sequence originally published by Meng,S.Y. and Bennett,G.N. in "Nucleotide sequence of the Escherichia coli cad operon: a system for neutralization of low extracellular pH" (1992) Lysine decarboxylase consumes protons to metabolize L-lysine to cadaverine and CO2. Expression of the cadA gene is normally controlled by cadC. Lysine decarboxylase uses pyridoxal 5'-phosphate as a cofactor. This is a HYPOTHETICAL part that has not gone under any testing but has been changed to biobrick format. false false _1855_ 31314 31314 9 false Sequence has strangely enough been optimized for expression within the Felix cattus genome. It is suggested that it be optimized again for the desired clone species. Prefix and suffix RE sites have been removed from the sequence. Again this part has not been tested and is HYPOTHETICAL only. false Andrew Alarcon Parker annotation2478640 1 Stop codon range2478640 1 2147 2151 annotation2478802 1 Coding sequence range2478802 1 1 2151 annotation2478639 1 Start codon range2478639 1 1 3 BBa_M45176 1 BBa_M45176 Coelenterazine analog 2016-04-12T11:00:00Z 2016-04-15T11:01:28Z Synthetic analog source NCBI Coelenterazine analog for luciferase substrate false false _1855_ 31353 31353 9 false None false Jay Barlow annotation2478634 1 Start codon range2478634 1 1 3 annotation2478636 1 Coding sequence range2478636 1 1 591 annotation2478635 1 Stop codon range2478635 1 589 591 BBa_K678019 1 BGH pA BGH poly A, mammalian terminator 2011-09-03T11:00:00Z 2015-05-08T01:13:04Z From plasmid pcDNA3.1 from Invitrogen BGH poly A, terminator for use in mammalian cells false false _882_ 0 8341 9 It's complicated false Compatible with the Plug'n'Play assembly standard false DTU-Denmark-2 annotation2127352 1 Linker 4 range2127352 1 1 8 annotation2127353 1 BGH range2127353 1 9 233 BBa_M45178_sequence 1 cagatccgccaggcgtgtatatatagcgtggatggccaggcaactttagtgctgacacatacaggcatatatatatgtgtgcgacgacacatgatcatatggcatgcatgtgctctgtatgtatataaaactcttgttttcttcttttctctaaatattctttccttatacattaggacctttgcagcataaattactatacttctatagacacacaaacacaaatacacacactaaattaatatactagagcccgccgccaccatggagtactagatgaaagcactgaccgcacgtcagcaggaagtttttgatctgattcgtgatcatattagccagaccggtatgccgccgacccgtgcagaaattgcacagcgtctgggttttcgtagcccgaatgcagcagaagaacatctgaaagcactggcacgtaaaggtgttattgaaattgttagcggtgcaagccgtggtattcgtctgttacaggaagaagaagaaggtctgccgctggttggtcgtgttgcagcaggtgaaccgctgctggcacagcagcatattgaaggtcattatcaggttgatccgagcctgtttaaaccgaatgcagattttctgctgcgtgttagcggtatgagcatgaaagatattggtattatggatggtgatctgctggcagttcataaaacccaggatgttcgtaatggtcaggttgttgttgcacgtattgatgatgaagttaccgttaaacgtctgaaaaaacagggtaataaagttgaactgctgccggaaaatagcgaatttaaaccgattgttgttgatctgcgtcagcagagctttaccattgaaggtctggcagttggtgttattcgtaatggtgattggctgtactagagcccgccgccaccatggagtactagatggcgtactccactctgttcataattgcattgaccgccgttgtcactcaagcttcctcaactcaaaaatctaacctaacttttacgttggcagatttcgttggagactggcaacagacagctggatacaaccaagatcaagtgttagaacaaggaggattgtctagtctgttccaagccctgggagtgtcagtcacgcccatacagaaagttgtactgtctggggagaatgggttaaaagctgatattcatgtcataataccttacgagggactcagtggttttcaaatgggtctaattgaaatgatcttcaaagttgtttaccccgtggatgatcatcatttcaagattattctccattatggtacactcgttattgacggtgtaacacccaacatgattgactactttggaagaccttaccctggaattgctgtatttgacggcaagcagatcacagttactggaactctgtggaacggcaacaagatctatgatgagaggctaatcaaccctgatggttcactcctcttcagagttactatcaatggagtcacgggatggaggctttgcgagaacattcttgcctaatactagagattccgatctgtgccttctagttgccagccatctgttgtttgcccctcccccgtgccttccttgaccctggaaggtgccactcccactgtcctttcctaataaaatgaggaaattgcatcgcattgtctgagtaggtgtcattctattctggggggtggggtggggcaggacagcaagggggaggattgggaagacaatagcaggcatgctggggatgcggtgggctctatggtactagatggcaattgatgaaaataaacagaaagcactggcagcagcactgggtcagattgaaaaacagtttggtaaaggtagcattatgcgtctgggtgaagatcgtagcatggatgttgaaaccattagcaccggtagcctgagcctggatattgcactgggtgcaggtggtctgccgatgggtcgtattgttgaaatttatggtccggaaagcagcggtaaaaccaccctgaccttacaggttattgcagcagcacagcgtgaaggtaaaacctgtgcatttattgatgcagaacatgcactggatccgatttatgcacgtaaactgggtgttgatattgataatctgctgtgtagccagccggataccggtgaacaggcactggaaatttgtgatgcactggcacgtagcggtgcagttgatgttattgttgttgatagcgttgcagcactgaccccgaaagcagaaattgaaggtgaaattggtgatagccatatgggtctggcagcacgtatgatgagccaggcaatgcgtaaactggcaggtaatctgaaacagagcaataccctgctgatttttattaatcagattcgtatgaaaattggtgttatgtttggtaatccggaaaccaccaccggtggtaatgcactgaaattttatgcaagcgttcgtctggatattcgtcgtattggtgcagttaaagaaggtgaaaatgttgttggtagcgaaacccgtgttaaagttgttaaaaataaaattgcagcaccgtttaaacaggcagaatttcagattctgtatggtgaaggtattaatttttatggtgaactggttgatctgggtgttaaagaaaaactgattgaaaaagcaggtgcatggtatagctataaaggtgaaaaaattggtcagggtaaagcaaatgcaaccgcatggctgaaagataatccggaaaccgcaaaagaaattgaaaaaaaagttcgtgaactgctgctgagcaatccgaatagcaccccggattttagcgttgatgatagcgaaggtgttgcagaaaccaatgaagatttttactagagcccgccgccaccatggagtactagatggatattaaggtggtcttcacactggtgttctccgccctggtgcaggctaagagcacggagttcgacccgaatatcgatatcgtggggttagaaggcaagttcgggatcacgaatctggagacagatctgttcacgatctgggagacaatggaagtcatgatcaaggccgacatcgccgacaccgaccgagcctccaattttgtggccacagagaccgatgctaacaggggcaaaatgccaggaaagaaactccctctcgccgtgataatggaaatggaagccaacgcattcaaagccggctgcactaggggctgtttaatatgcctgagtaagataaaatgtaccgccaagatgaaggtgtacattcccggaagatgtcacgattacgggggtgacaaaaaaaccgggcaagccgggatcgtgggcgccatcgtggatattcccgaaattagcgggttcaaggagatggcgcccatggaacagtttatcgcgcaggttgaccgttgtgcctcatgtaccacaggctgcctgaaaggcttagccaacgtgaagtgctccgagctgttgaaaaagtggctgcctgaccgatgcgcctctttcgctgataaaatccagaaagaggtgcataacattaaaggaatggcgggagaccgatagtactagagcccgccgccaccatggagtactagatgaacgtgatcgctattctgaaccatatgggtgtatactttaaggaagagcctatcagggaactccatcgcgcacttgagcggttaaacttccagatagtttaccccaacgatcgagatgatctgctgaagttaatcgagaataacgctcggctgtgtggagtgatcttcgactgggataagtacaatctggaactgtgtgaagagatttctaaaatgaacgagaatctaccgctctacgccttcgccaacacctatagcaccttagatgtcagtctgaatgatctgaggctccagatcagctttttcgagtacgccctgggcgctgctgaagacatagcaaacaagatcaaacagaccacggacgaatacatcaatacaattctccctcccctgaccaaagctctcttcaagtatgtaagagagggcaagtacaccttttgcacgccaggacacatggggggaaccgctttccagaaatcacccgtaggatccctgttctacgatttttttgggcctaataccatgaagagtgacatcagcatatccgtttcagaactagggagtcttctggaccacagtggccctcacaaagaggccgagcagtacattgccagggtgtttaacgccgatagatcctatatggtcactaatgggacttcgaccgctaataagatcgtcggcatgtattcagctcccgccgggtccactatcttaatcgaccgcaattgccacaagtctttgacccacctaatgatgatgtccgacgttacacctatctatttccgaccgactaggaacgcctacgggatccttggtggcattcctcagtcggagtttcagcatgctaccatcgccaaaagggtgaaggaaactcccaatgcgacatggccggtgcatgccgtgatcactaactccacatatgatggactcctttataatacggactttatcaagaagacgctcgacgtaaaatcgattcattttgatagcgcctgggtgccttacaccaatttcagccccatctatgaggggaagtgcggcatgtcggggggccgcgtggagggaaaggttatctacgagacccagtccacccacaaactgctagcagccttcagccaggcctctatgattcatgtgaaaggcgacgttaatgaggagacctttaacgaggcatacatgatgcatactaccacctctccacattatggtatcgtcgcctccaccgaaacagcggcagccatgatgaagggaaatgccgggaaacggcttatcaacggttccatcgagcgcgccatcaaattcaggaaggaaatcaagagattgcgcaccgaatcagacggatggttcttcgacgtgtggcagcccgatcacatcgatactactgaatgctggccgctgagaagcgactctacttggcacggattcaagaacatcgataatgaacacatgtacctcgatcccatcaaagtgaccctcttaacccccggaatggaaaaagacggaacaatgtccgactttggtatcccggcgtctatcgtggctaaatatctcgacgagcacggaatcgtggtggagaagactggaccttataatctcctgttcctgttttctataggcatcgacaagacaaaggccctatctctgctgagggccttaaccgacttcaagcgggcttttgatctgaacctgcgggtgaagaacatgctgccttccctttatagggaggatccagagttctacgaaaatatgcgcatccaggagctcgcgcagaacatccataaacttatagtccatcataacctcccagacctgatgtatagggctttcgaggttttacctaccatggtgatgaccccctacgctgcttttcaaaaggagctccacggtatgactgaggaagtgtacttggatgagatggtaggccgcattaatgctaacatgatacttccatacccccctggcgtgcccttggtgatgcccggcgaaatgataaccgaagagtcccggcctgtgctggaatttcttcaaatgctctgcgagattggcgctcactaccccggcttcgagaccgatattcacggcgcctacagacaggctgacggccggtataccgtcaaagtgctaaaagaagaatctaagaagtaataatactagagattccgatctgtgccttctagttgccagccatctgttgtttgcccctcccccgtgccttccttgaccctggaaggtgccactcccactgtcctttcctaataaaatgaggaaattgcatcgcattgtctgagtaggtgtcattctattctggggggtggggtggggcaggacagcaagggggaggattgggaagacaatagcaggcatgctggggatgcggtgggctctatgg BBa_K165002_sequence 1 cccgccgccaccatggag BBa_K678019_sequence 1 attccgatctgtgccttctagttgccagccatctgttgtttgcccctcccccgtgccttccttgaccctggaaggtgccactcccactgtcctttcctaataaaatgaggaaattgcatcgcattgtctgagtaggtgtcattctattctggggggtggggtggggcaggacagcaagggggaggattgggaagacaatagcaggcatgctggggatgcggtgggctctatgg BBa_I766555_sequence 1 cagatccgccaggcgtgtatatatagcgtggatggccaggcaactttagtgctgacacatacaggcatatatatatgtgtgcgacgacacatgatcatatggcatgcatgtgctctgtatgtatataaaactcttgttttcttcttttctctaaatattctttccttatacattaggacctttgcagcataaattactatacttctatagacacacaaacacaaatacacacactaaattaata BBa_M45176_sequence 1 atggcgtactccactctgttcataattgcattgaccgccgttgtcactcaagcttcctcaactcaaaaatctaacctaacttttacgttggcagatttcgttggagactggcaacagacagctggatacaaccaagatcaagtgttagaacaaggaggattgtctagtctgttccaagccctgggagtgtcagtcacgcccatacagaaagttgtactgtctggggagaatgggttaaaagctgatattcatgtcataataccttacgagggactcagtggttttcaaatgggtctaattgaaatgatcttcaaagttgtttaccccgtggatgatcatcatttcaagattattctccattatggtacactcgttattgacggtgtaacacccaacatgattgactactttggaagaccttaccctggaattgctgtatttgacggcaagcagatcacagttactggaactctgtggaacggcaacaagatctatgatgagaggctaatcaaccctgatggttcactcctcttcagagttactatcaatggagtcacgggatggaggctttgcgagaacattcttgcctaa BBa_M45172_sequence 1 atgaacgtgatcgctattctgaaccatatgggtgtatactttaaggaagagcctatcagggaactccatcgcgcacttgagcggttaaacttccagatagtttaccccaacgatcgagatgatctgctgaagttaatcgagaataacgctcggctgtgtggagtgatcttcgactgggataagtacaatctggaactgtgtgaagagatttctaaaatgaacgagaatctaccgctctacgccttcgccaacacctatagcaccttagatgtcagtctgaatgatctgaggctccagatcagctttttcgagtacgccctgggcgctgctgaagacatagcaaacaagatcaaacagaccacggacgaatacatcaatacaattctccctcccctgaccaaagctctcttcaagtatgtaagagagggcaagtacaccttttgcacgccaggacacatggggggaaccgctttccagaaatcacccgtaggatccctgttctacgatttttttgggcctaataccatgaagagtgacatcagcatatccgtttcagaactagggagtcttctggaccacagtggccctcacaaagaggccgagcagtacattgccagggtgtttaacgccgatagatcctatatggtcactaatgggacttcgaccgctaataagatcgtcggcatgtattcagctcccgccgggtccactatcttaatcgaccgcaattgccacaagtctttgacccacctaatgatgatgtccgacgttacacctatctatttccgaccgactaggaacgcctacgggatccttggtggcattcctcagtcggagtttcagcatgctaccatcgccaaaagggtgaaggaaactcccaatgcgacatggccggtgcatgccgtgatcactaactccacatatgatggactcctttataatacggactttatcaagaagacgctcgacgtaaaatcgattcattttgatagcgcctgggtgccttacaccaatttcagccccatctatgaggggaagtgcggcatgtcggggggccgcgtggagggaaaggttatctacgagacccagtccacccacaaactgctagcagccttcagccaggcctctatgattcatgtgaaaggcgacgttaatgaggagacctttaacgaggcatacatgatgcatactaccacctctccacattatggtatcgtcgcctccaccgaaacagcggcagccatgatgaagggaaatgccgggaaacggcttatcaacggttccatcgagcgcgccatcaaattcaggaaggaaatcaagagattgcgcaccgaatcagacggatggttcttcgacgtgtggcagcccgatcacatcgatactactgaatgctggccgctgagaagcgactctacttggcacggattcaagaacatcgataatgaacacatgtacctcgatcccatcaaagtgaccctcttaacccccggaatggaaaaagacggaacaatgtccgactttggtatcccggcgtctatcgtggctaaatatctcgacgagcacggaatcgtggtggagaagactggaccttataatctcctgttcctgttttctataggcatcgacaagacaaaggccctatctctgctgagggccttaaccgacttcaagcgggcttttgatctgaacctgcgggtgaagaacatgctgccttccctttatagggaggatccagagttctacgaaaatatgcgcatccaggagctcgcgcagaacatccataaacttatagtccatcataacctcccagacctgatgtatagggctttcgaggttttacctaccatggtgatgaccccctacgctgcttttcaaaaggagctccacggtatgactgaggaagtgtacttggatgagatggtaggccgcattaatgctaacatgatacttccatacccccctggcgtgcccttggtgatgcccggcgaaatgataaccgaagagtcccggcctgtgctggaatttcttcaaatgctctgcgagattggcgctcactaccccggcttcgagaccgatattcacggcgcctacagacaggctgacggccggtataccgtcaaagtgctaaaagaagaatctaagaagtaataa BBa_M45188_sequence 1 atggcaattgatgaaaataaacagaaagcactggcagcagcactgggtcagattgaaaaacagtttggtaaaggtagcattatgcgtctgggtgaagatcgtagcatggatgttgaaaccattagcaccggtagcctgagcctggatattgcactgggtgcaggtggtctgccgatgggtcgtattgttgaaatttatggtccggaaagcagcggtaaaaccaccctgaccttacaggttattgcagcagcacagcgtgaaggtaaaacctgtgcatttattgatgcagaacatgcactggatccgatttatgcacgtaaactgggtgttgatattgataatctgctgtgtagccagccggataccggtgaacaggcactggaaatttgtgatgcactggcacgtagcggtgcagttgatgttattgttgttgatagcgttgcagcactgaccccgaaagcagaaattgaaggtgaaattggtgatagccatatgggtctggcagcacgtatgatgagccaggcaatgcgtaaactggcaggtaatctgaaacagagcaataccctgctgatttttattaatcagattcgtatgaaaattggtgttatgtttggtaatccggaaaccaccaccggtggtaatgcactgaaattttatgcaagcgttcgtctggatattcgtcgtattggtgcagttaaagaaggtgaaaatgttgttggtagcgaaacccgtgttaaagttgttaaaaataaaattgcagcaccgtttaaacaggcagaatttcagattctgtatggtgaaggtattaatttttatggtgaactggttgatctgggtgttaaagaaaaactgattgaaaaagcaggtgcatggtatagctataaaggtgaaaaaattggtcagggtaaagcaaatgcaaccgcatggctgaaagataatccggaaaccgcaaaagaaattgaaaaaaaagttcgtgaactgctgctgagcaatccgaatagcaccccggattttagcgttgatgatagcgaaggtgttgcagaaaccaatgaagatttt BBa_M45189_sequence 1 atgaaagcactgaccgcacgtcagcaggaagtttttgatctgattcgtgatcatattagccagaccggtatgccgccgacccgtgcagaaattgcacagcgtctgggttttcgtagcccgaatgcagcagaagaacatctgaaagcactggcacgtaaaggtgttattgaaattgttagcggtgcaagccgtggtattcgtctgttacaggaagaagaagaaggtctgccgctggttggtcgtgttgcagcaggtgaaccgctgctggcacagcagcatattgaaggtcattatcaggttgatccgagcctgtttaaaccgaatgcagattttctgctgcgtgttagcggtatgagcatgaaagatattggtattatggatggtgatctgctggcagttcataaaacccaggatgttcgtaatggtcaggttgttgttgcacgtattgatgatgaagttaccgttaaacgtctgaaaaaacagggtaataaagttgaactgctgccggaaaatagcgaatttaaaccgattgttgttgatctgcgtcagcagagctttaccattgaaggtctggcagttggtgttattcgtaatggtgattggctg BBa_M45175_sequence 1 atggatattaaggtggtcttcacactggtgttctccgccctggtgcaggctaagagcacggagttcgacccgaatatcgatatcgtggggttagaaggcaagttcgggatcacgaatctggagacagatctgttcacgatctgggagacaatggaagtcatgatcaaggccgacatcgccgacaccgaccgagcctccaattttgtggccacagagaccgatgctaacaggggcaaaatgccaggaaagaaactccctctcgccgtgataatggaaatggaagccaacgcattcaaagccggctgcactaggggctgtttaatatgcctgagtaagataaaatgtaccgccaagatgaaggtgtacattcccggaagatgtcacgattacgggggtgacaaaaaaaccgggcaagccgggatcgtgggcgccatcgtggatattcccgaaattagcgggttcaaggagatggcgcccatggaacagtttatcgcgcaggttgaccgttgtgcctcatgtaccacaggctgcctgaaaggcttagccaacgtgaagtgctccgagctgttgaaaaagtggctgcctgaccgatgcgcctctttcgctgataaaatccagaaagaggtgcataacattaaaggaatggcgggagaccgatag igem2sbol 1 iGEM to SBOL conversion Conversion of the iGEM parts registry to SBOL2.1 James Alastair McLaughlin Chris J. Myers 2017-03-06T15:00:00.000Z