SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_E0430BBa_E0430 Version 1 (Component)EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
Bacillus subtilis Collectionbsu_collection Version 1 (Collection)This collection includes information about promoters, operators, CDSs and proteins from Bacillus subtilis. Functional interactions such as transcriptional activation and repression, protein production and various protein-protein interactions are also included.
BBa_B0010BBa_B0010 Version 1 (Component)T1 from E. coli rrnB
BBa_B0012BBa_B0012 Version 1 (Component)TE from coliphageT7
BBa_K1051006BBa_K1051006 Version 1 (Component)Saccharomycescerevisiae TBY-1 terminator with stopcodon
BBa_E0422BBa_E0422 Version 1 (Component)ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)
BBa_E0420BBa_E0420 Version 1 (Component)ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)
spacerBBa_B0040 Version 1 (Component)Spacer.1 (generic)
Lock 1BBa_J01010 Version 1 (Component)Riboregulator Lock 1
BBa_E0432BBa_E0432 Version 1 (Component)EYFP (RBS+ LVA+ TERM) (B0034.E0032.B0015)
NLS+TermBBa_K165018 Version 1 (Component)SV40 nuclear localization sequence + ADH1 transcription terminator
BBa_B0015BBa_B0015 Version 1 (Component)double terminator (B0010-B0012)
P22 attPBBa_I11033 Version 1 (Component)P22 ''attP''
BBa_I732820BBa_I732820 Version 1 (Component)LacI (RBS+, TERM+)
BBa_P0455BBa_P0455 Version 1 (Component)RBS.Lambda cI LVA+.Term
Key 1BBa_J01008 Version 1 (Component)Riboregulator key 1
BBa_K516022BBa_K516022 Version 1 (Component)AiiA protein generator TERM+ RBS+(B0032)
BBa_I712015BBa_I712015 Version 1 (Component)HIV-1 protease cleavage site
BBa_K081009BBa_K081009 Version 1 (Component)lasI protein generator (TERM-)
BBa_K617004BBa_K617004 Version 1 (Component)Lambda attP P'OP
BBa_I732017BBa_I732017 Version 1 (Component)lacZ full-length (RBS+ TERM-)
BBa_K081008BBa_K081008 Version 1 (Component)luxI protein generator (TERM-)
BBa_K516030BBa_K516030 Version 1 (Component)mRFP protein generator TERM+ RBS+(B0030)
BBa_K2071953BBa_K2071953 Version 1 (Component)A non-specific phosphotransferase, codon optimized for B.subtilis. Characterized in https://microbia
BBa_K2071969BBa_K2071969 Version 1 (Component)GLD1 is a general reductase, it is characterized in https://microbialcellfactories.biomedcentral.com
BBa_K415000BBa_K415000 Version 1 (Component)pLux/cI-OR : RBS-mCherry : Term
HutPBO_10864 Version 1 (Component) BBa_B0029BBa_B0029 Version 1 (Component)1 bp deletion from B0031
p(tetR)BBa_R0040 Version 1 (Component)TetR repressible promoter
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
RFC105 ZBBa_K1362421 Version 1 (Component)C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
YttPBO_10887 Version 1 (Component) BBa_K876060BBa_K876060 Version 1 (Component)Term-Term-plasR-RBS-CFP-Term-Term
BBa_K876057BBa_K876057 Version 1 (Component)pTetR-lasR-Term-Term
BBa_K876067BBa_K876067 Version 1 (Component)Term-Term-pLac-LuxR
BBa_K165007BBa_K165007 Version 1 (Component)Gli-1 DNA-binding domain
BBa_K876068BBa_K876068 Version 1 (Component)Term-Term-pLsrA-LacI
BBa_K876069BBa_K876069 Version 1 (Component)Term-Term-pLuxR-TetR
attPBBa_K1463040 Version 1 (Component)PhiC31 attP site
BBa_K1114302BBa_K1114302 Version 1 (Component)This is <a href="http://2013.igem.org/Team:BostonU/MoCloChara">MoClo</a> formatted part of BBa_B001
cI TP901BBa_C0075 Version 1 (Component)TP901 cI repressor from phage TP901-1 (+LVA)
COX3 termiBBa_K809005 Version 1 (Component)Terminator of Yeast mitochondrial gene COX3