Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_K390001BBa_K390001 Version 1 (Component)5'UTR and native RBS from psbA2 in Synechocystis sp. PCC 6803
BBa_K390002BBa_K390002 Version 1 (Component)5'UTR and consensus RBS from psbA2 in Synechocystis sp. PCC 6803
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
GerEBO_11469 Version 1 (Component) BBa_I15008BBa_I15008 Version 1 (Component)heme oxygenase (ho1) from Synechocystis
BBa_I15009BBa_I15009 Version 1 (Component)phycocyanobilin:ferredoxin oxidoreductase (PcyA) from synechocystis
BBa_K390017BBa_K390017 Version 1 (Component)psbA2 promoter, 5'UTR, and RBS
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K390005BBa_K390005 Version 1 (Component)psbA2 Type I promoter from Synechocystis sp. PCC 6803
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
BBa_M11409BBa_M11409 Version 1 (Component)Promoter of pglnBP2 gene in Synechocystis sp. PCC 6803.
T7 RBSBBa_K1362090 Version 1 (Component)strong T7 RBS
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
BBa_K390007BBa_K390007 Version 1 (Component)sigE Type II promoter from Synechocystis sp. PCC 6803
BBa_K390012BBa_K390012 Version 1 (Component)pilA1 Type III promoter from Synechocystis sp. PCC 6803
BBa_K390010BBa_K390010 Version 1 (Component)hspA Type I Promoter from Synechocystis sp. PCC 6803
BBa_K390008BBa_K390008 Version 1 (Component)lrtA Type II promoter from Synechocystis sp. PCC 6803
BBa_K390009BBa_K390009 Version 1 (Component)sigF Type III promoter from Synechocystis sp. PCC 6803
BBa_K390006BBa_K390006 Version 1 (Component)sigA Type I promoter from Synechocystis sp. PCC 6803
BBa_K1476001BBa_K1476001 Version 1 (Component)PilA1 from Synechocystis sp. PCC 6803
BBa_K390003BBa_K390003 Version 1 (Component)pilA secretion tag for Synechocystis sp. PCC 6803
BBa_K390004BBa_K390004 Version 1 (Component)art+ secretion tag for Synechocystis sp. PCC 6803
BBa_K1476004BBa_K1476004 Version 1 (Component)petF from Synechocystis sp. PCC 6803
BBa_K1476000BBa_K1476000 Version 1 (Component)PilT1 knockout for Synechocystis sp. PCC 6803
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_K1476003BBa_K1476003 Version 1 (Component)PsaD deletion for Synechocystis sp. PCC 6803
BBa_K390029BBa_K390029 Version 1 (Component)GFP with 5'UTR and consensus RBS from Synechocystis sp. PCC 6803
BBa_K390028BBa_K390028 Version 1 (Component)GFP with 5'UTR and native RBS from Synechocystis sp. PCC 6803
BBa_M11406BBa_M11406 Version 1 (Component)Type 1 promoter of psaAB operon in Synechocystis sp. PCC 6803
BBa_M11405BBa_M11405 Version 1 (Component)Type 1 promoter of petBD operon in Synechocystis sp. PCC 6803