CnU6
CnU6_terminator Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans JEC21

CnU6
GenBank_AE017348_Region_871991_872263 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans JEC21

GAL7
GenBank_CP003831_Region_178967_179986 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubii H99

TEF1
GenBank_CP003831_Region_375181_376053 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubi H99

UGE2
GenBank_CP003831_Region_176453_177430 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubii H99

HOG1
GenBank_CP003830_Region_176667_176966 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubi H99

TEF1
GenBank_CP003831_Region_377755_378976 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubi H99

GPD
GenBank_AE017346_Region_940695_942557 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans JEC21

TRP1
GenBank_CP003828_Region_1023919_1024166 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubi H99

GAL7
GenBank_AE017353_Region_190704_1911746 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans JEC21

Cas9
Cas9 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubi H99

GAL1
GenBank_CP003831_Region_176110_177085 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubii H99

URA5
GenBank_CM000046_Region_302227_303005 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans B-3501A

URA5
GenBank_CM000046_Region_301512_302226 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans B-3501A

URA5
GenBank_CM000046_Region_303006_303540 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. neoformans B-3501A

APP1
GenBank_CP047908_Region_1244167_1244926 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubii H99 (Cryptococcus neoformans serotype A)

ACT1
GenBank_CP003820_Region_1242235_1243067 Version 1 (Unknown)
Organism: Cryptococcus neoformans var. grubii H99 (Cryptococcus neoformans serotype A)

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

lacI ts
BBa_J06501 Version 1 (Component)
LacI repressor (temperature-sensitive mut 265) (+LVA)

BBa_J06801
BBa_J06801 Version 1 (Component)
QPI (B0034.J06501.B0015.R0011)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_J52001
BBa_J52001 Version 1 (Component)
rluc

BBa_J06701
BBa_J06701 Version 1 (Component)
mCherry with RBS and forward terminator

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_J56004
BBa_J56004 Version 1 (Component)
<Composite> Tar EA400 binds to BBa_J56001

BBa_J56001
BBa_J56001 Version 1 (Component)
CheW with VM108 mutation for orthogonal interaction with Tar EA400

TraJR
BBa_J01001 Version 1 (Component)
TraJr protein (controls conjugative transfer in RP4 plasmid)

BBa_J59001
BBa_J59001 Version 1 (Component)
tuba

BBa_J56005
BBa_J56005 Version 1 (Component)
Codon-optimized aspartate receptor, the periplasmic domain of Tar

BBa_J56009
BBa_J56009 Version 1 (Component)
Phenylalanine-responsive receptor, signaling (cytoplasmic) domain

BBa_J56008
BBa_J56008 Version 1 (Component)
Phenylalanine-responsive receptor, periplasmic domain

BBa_J56006
BBa_J56006 Version 1 (Component)
Codon-optimized signaling domain, cytoplasmic domain of Tar

BBa_J56011
BBa_J56011 Version 1 (Component)
MCSII

BBa_J08001
BBa_J08001 Version 1 (Component)
-- Death --

BBa_J46001
BBa_J46001 Version 1 (Component)
HSL amplifier

BBa_J54001
BBa_J54001 Version 1 (Component)
cytR

BBa_J56003
BBa_J56003 Version 1 (Component)
Tar mutated to respond to phenylalanine instead of aspartate