SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
EFEBBa_K1065000 Version 1 (Component)<html>2-oxoglutarate oxygenase/decarboxylase (EFE)</html>
BBa_I15008BBa_I15008 Version 1 (Component)heme oxygenase (ho1) from Synechocystis
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
EFE generaBBa_K1065001 Version 1 (Component)AraC-pBAD + 2-oxoglutarate oxygenase/decarboxylase (EFE) + terminators
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
"Eye 2"BBa_K1080011 Version 1 (Component)ChlI2
BBa_K1977002BBa_K1977002 Version 1 (Component)HemL glutamate-1-semialdehyde aminotransferase
BBa_K539714BBa_K539714 Version 1 (Component)kivd (alpha-ketoisovalerate decarboxylase)
BBa_K187129BBa_K187129 Version 1 (Component)hemL ORF forward primer
BBa_K187131BBa_K187131 Version 1 (Component)hemL ORF reverse primer
ADCBBa_K590031 Version 1 (Component)Aldehyde Decarbonylase (ADC) - Synechococcus elongatus PCC7942
BBa_I766102BBa_I766102 Version 1 (Component)EE Leucine Zipper
BBa_K515000BBa_K515000 Version 1 (Component)IaaM - tryptophan-2-mono-oxygenase
EFE + TBBa_K1065002 Version 1 (Component)EFE + Terminators
BBa_K1465202BBa_K1465202 Version 1 (Component)Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) from Halothiobacillus neapolitanus
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
pFeBBa_I765000 Version 1 (Component)Fe promoter
BBa_K123002BBa_K123002 Version 1 (Component)LacIQ ERE TetR
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_M36042BBa_M36042 Version 1 (Component)EfeU elemental iron (II) transporter
CSADBBa_K2004008 Version 1 (Component)GADL1 Acidic Amino Acid Decarboxylase
BBa_K192099BBa_K192099 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K1465203BBa_K1465203 Version 1 (Component)Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) from Synechococcus elongatus
BBa_K357000BBa_K357000 Version 1 (Component)catechol 1 2-dioxygenase
BBa_K192100BBa_K192100 Version 1 (Component)catechol 1 2-dioxygenase
cadABBa_K1602003 Version 1 (Component)Cis-aconitate decarboxylase (cadA) from Aspergillus terreus
BBa_K316003BBa_K316003 Version 1 (Component)XylE - catechol 2,3-dioxygenase from P.putida with terminator
BBa_K2155001BBa_K2155001 Version 1 (Component)BFD-Benzoylformate Decarboxylase
BBa_K953000BBa_K953000 Version 1 (Component)Heme Oxygenase with T7 & RBS (E. coli Codon Optimised)
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)
BBa_K1763442BBa_K1763442 Version 1 (Component)MaSp1/2[1:2]-12(1C3)
BBa_K1763438BBa_K1763438 Version 1 (Component)MaSp1/2[2:1]-12(1C3)
CDOBBa_K2004007 Version 1 (Component)Cysteine dioxygenase (CDO)
BBa_K539731BBa_K539731 Version 1 (Component)kivd (alpha-ketoisovalerate decarboxylase) under TetR repressible promoter
BBa_M1104BBa_M1104 Version 1 (Component)carboxymuconolactone decarboxylase
BBa_K079019BBa_K079019 Version 1 (Component)Lac 2 - operator library member
pdcBBa_K273000 Version 1 (Component)Pyruvate decarboxylase (pdc) from <i>Z. Mobilis</i> ATCC 29191
THI3BBa_J45009 Version 1 (Component)ketoisocaproate decarboxylase (THI3); converts alpha-ketoisocaproate to 3-methylbutanal
BBa_M11041BBa_M11041 Version 1 (Component)pyruvate decarboxylase
BBa_K2013015BBa_K2013015 Version 1 (Component)protocatechuate decarboxylase
BBa_K1692000BBa_K1692000 Version 1 (Component)Ferulic acid decarboxylase (FDC)
BBa_K1692001BBa_K1692001 Version 1 (Component)Ferulic acid decarboxylase (FDC) with T7 promoter and RBS
BBa_K1763439BBa_K1763439 Version 1 (Component)MaSp1/2[2:1]-12(T7)
BBa_K1763443BBa_K1763443 Version 1 (Component)MaSp1/2[1:2]-12(T7)