Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

P(Lac) IQ
BBa_I14032 Version 1 (Component)
promoter P(Lac) IQ

OmpR
BBa_R0082 Version 1 (Component)
Promoter (OmpR, positive)

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_K235026
BBa_K235026 Version 1 (Component)
[K235022][K235001] (NAND gate control test, pLac positive control)

BBa_K235028
BBa_K235028 Version 1 (Component)
[K235024][K235001] (NAND gate control test, positive control)

BBa_K235027
BBa_K235027 Version 1 (Component)
[K235024][K235000] (NAND gate control test, arabinose positive control)

BBa_K864400
BBa_K864400 Version 1 (Component)
Ptac, trp & lac regulated promoter

BBa_K115001
BBa_K115001 Version 1 (Component)
RNA thermometer (ROSE)

BBa_K235025
BBa_K235025 Version 1 (Component)
[K235022][K235000] (NAND gate, pAra and pLac input signal control, mCherry output signal)

OmpR
BBa_R0084 Version 1 (Component)
Promoter (OmpR, positive)

BBa_K235018
BBa_K235018 Version 1 (Component)
[K235015][K235005] pLambda-controlled mCherry generator

BBa_J33207
BBa_J33207 Version 1 (Component)
lac promoter and lacZ

BBa_K235024
BBa_K235024 Version 1 (Component)
[K235018][K235021] (mCherry generator, ribokey-mediated signal inversion)

BBa_K235021
BBa_K235021 Version 1 (Component)
[K235009][K235003] (ribokey-mediated lambda repressor generator)

BBa_K235020
BBa_K235020 Version 1 (Component)
[K235017][K235003] (pAra-controlled lambda repressor generator)

pLac
BBa_K1638000 Version 1 (Component)
Lac operator

OmpR
BBa_R0083 Version 1 (Component)
Promoter (OmpR, positive)

BBa_K235003
BBa_K235003 Version 1 (Component)
[C0051][B0015] (lambda cI CDS+stop)

BBa_K235011
BBa_K235011 Version 1 (Component)
[K235009][K235005] (ribokey-controlled mCherry generator)

BBa_K235033
BBa_K235033 Version 1 (Component)
[K235030][K235031] (constituitive promoter+32??C RBS thermometer+LacI+stop)

BBa_K235019
BBa_K235019 Version 1 (Component)
[K235016][K235003] (ribokey-mediated pAra-controlled lambda repressor generator)

BBa_K235022
BBa_K235022 Version 1 (Component)
[K235018][K235019] (mCherry generator, pAra-controlled ribokey-mediated signal inversion)

BBa_K314103
BBa_K314103 Version 1 (Component)
Lac induced expression cassette

sfGFP_T65C
BBa_K1362170 Version 1 (Component)
Split sfGFP reconstitution positive control

BBa_K235023
BBa_K235023 Version 1 (Component)
[K235018][K235020] (mCherry generator, pAra-controlled signal inversion)

pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

BBa_K235035
BBa_K235035 Version 1 (Component)
[K235033][K235032] (constituitive promoter+32??C RBS thermometer+LacI+stop+pLac+RBS+GFP+stop)

BBa_K215001
BBa_K215001 Version 1 (Component)
Secretion Signal and Streptavidin Binding Tags

lac Or2-62
BBa_I12210 Version 1 (Component)
plac Or2-62 (positive)

BBa_K235036
BBa_K235036 Version 1 (Component)
[K235030][K235005] (constituitive promoter+32??C RBS thermometer+mCherry CDS+stop)

BBa_K235005
BBa_K235005 Version 1 (Component)
[J06504][B0015] (mCherry CDS+stop)

BBa_K1465306
BBa_K1465306 Version 1 (Component)
Isobutanol pathway under Ptac control

BBa_K762002
BBa_K762002 Version 1 (Component)
TCC Positive Control

BBa_I751500
BBa_I751500 Version 1 (Component)
pcI (for positive control of pcI-lux hybrid promoter)

BBa_K208010
BBa_K208010 Version 1 (Component)
Lac Promoter (BBa_R0010) and RBS (B0034)

PEST
BBa_J176018 Version 1 (Component)
PEST

BBa_K1325001
BBa_K1325001 Version 1 (Component)
ranscriptionfactor