SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K2013019BBa_K2013019 Version 1 (Component)4-hydroxy-2-ketovalerate aldolase
MSABBa_K1392932 Version 1 (Component)4-hydroxy-2-ketovalerate aldolase
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_K1088004BBa_K1088004 Version 1 (Component)IspG (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
folBBBa_K137009 Version 1 (Component)folB (dihydroneopterin aldolase)
BBa_I725011BBa_I725011 Version 1 (Component)B-hydroxy butyryl coA dehydrogenase
CirCirBBa_K1392930 Version 1 (Component)2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K1497010BBa_K1497010 Version 1 (Component)Dihydroflavonol 4-reductase (DFR)
HMG-CoA-RBBa_K849000 Version 1 (Component)3-Hydroxy-3-Methyl-Glutaryl-CoA-Reductase from Yeast
GRE3BBa_K1602004 Version 1 (Component)Aldose reductase (GRE3) from Saccharomyces cerevisiae S288c
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)
BBa_J202003BBa_J202003 Version 1 (Component)PBAD Mutant#4
circircidoBBa_K1392931 Version 1 (Component)2-oxopent-4-enoate hydratase
BBa_K2013017BBa_K2013017 Version 1 (Component)2-oxopent-4-enoate hydratase
BBa_K2013018BBa_K2013018 Version 1 (Component)2-oxopent-4-enoate hydratase
BBa_K1763442BBa_K1763442 Version 1 (Component)MaSp1/2[1:2]-12(1C3)
BBa_K1763438BBa_K1763438 Version 1 (Component)MaSp1/2[2:1]-12(1C3)
BBa_K078009BBa_K078009 Version 1 (Component)bphD codes 2-hydroxy-6-oxo-6-phenylhexa-2,4- dienoate hydrolase
BBa_J100044BBa_J100044 Version 1 (Component)LuxI with 4 clause 2-SAT problem
LacBBa_K500003 Version 1 (Component)lignin degradation 4
BBa_I742011BBa_I742011 Version 1 (Component)ech (feruloyl hydratase/aldolase; vanillin biosynthesis)
BBa_K801093BBa_K801093 Version 1 (Component)4-coumarate--coenzyme A ligase (4CL) coding region
BBa_I13515BBa_I13515 Version 1 (Component)Screening Plasmid 4
BBa_K079019BBa_K079019 Version 1 (Component)Lac 2 - operator library member
BBa_K1940011BBa_K1940011 Version 1 (Component)microRNA-34c detector 2.0-2-4
ssrA(DAS+4BBa_K1075020 Version 1 (Component)E. coli ssrA(DAS+4)
BBa_K1150042BBa_K1150042 Version 1 (Component)uniCAS RNaimer to Bla Target 4
BBa_J07012BBa_J07012 Version 1 (Component)scFv anti-fluorescein [4-4-20]
BBa_K1129002BBa_K1129002 Version 1 (Component)Enoyl-CoA hydratase/aldolase (ECH) from Pseudomonas putida
BBa_K2066020BBa_K2066020 Version 1 (Component)UNS 4 Sequence, from Torella et al., 2013
BBa_K1763439BBa_K1763439 Version 1 (Component)MaSp1/2[2:1]-12(T7)
BBa_K1763443BBa_K1763443 Version 1 (Component)MaSp1/2[1:2]-12(T7)
BBa_I742012BBa_I742012 Version 1 (Component)rbs + ech (feruloyl hydratase/aldolase)
Lin-2BO_9115 Version 1 (Component) BBa_K1150046BBa_K1150046 Version 1 (Component)uniCAS RNaimer multiple targets to Bla target 2, 3, 4 and VEGF 4
"Eye 2"BBa_K1080011 Version 1 (Component)ChlI2
BBa_K1351031BBa_K1351031 Version 1 (Component)LMU Bacillus RBS collection 4
2/3GlyBBa_K1362467 Version 1 (Component)other 2/3Gly
BBa_K1150045BBa_K1150045 Version 1 (Component)uniCAS RNaimer multiple targets to VEGF 4 and bla target 2