Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
EcoRIEcoRI Version 1 (Component) NheINheI Version 1 (Component) PacIPacI Version 1 (Component) SpeISpeI Version 1 (Component) BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
BBa_K145201BBa_K145201 Version 1 (Component)INPUT TetR generator
BBa_K1886007BBa_K1886007 Version 1 (Component)AND GATE-input
BBa_K568004BBa_K568004 Version 1 (Component)Optogenetical AND-Gate blue light - without first promoter - choose your first input
BBa_K851002BBa_K851002 Version 1 (Component)pBAD-pXyl AND Gate
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K608002BBa_K608002 Version 1 (Component)strong Promoter and strong RBS
BBa_K2116012BBa_K2116012 Version 1 (Component)AND gate with Nitric Oxide and AHL as inputs
mCherryBBa_J06702 Version 1 (Component)mCherry, bacterial with RBS and forward terminator
BBa_K228009BBa_K228009 Version 1 (Component)AraC protein(reversed sequence) and Pbad promoter
BBa_M39018BBa_M39018 Version 1 (Component)HrpL AND gate
BBa_K081005BBa_K081005 Version 1 (Component)constitutive promoter family member and RBS
cinRBBa_R0078 Version 1 (Component)Promoter (cinR and HSL regulated)
BBa_J34100BBa_J34100 Version 1 (Component)AND gate, 2x PoPS input, 1x PoPS output
BBa_K568001BBa_K568001 Version 1 (Component)Optogenetical AND-Gate red/blue light
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1363605BBa_K1363605 Version 1 (Component)gate of and of RNA logic gates
BBa_K568006BBa_K568006 Version 1 (Component)Intermediate synthetic part of optogenetical AND-Gate
BBa_K235025BBa_K235025 Version 1 (Component)[K235022][K235000] (NAND gate, pAra and pLac input signal control, mCherry output signal)
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
input-lacIBBa_S03334 Version 1 (Component)Constitutive lacI-production to block cI production.
BBa_K779503BBa_K779503 Version 1 (Component)Long input strand MammoBlock
BBa_K2116004BBa_K2116004 Version 1 (Component)AND gate regulated by norR and esaR (one esabox)
BBa_K1363607BBa_K1363607 Version 1 (Component)key-2 of and-gate of RNA logic gates
BBa_K1363606BBa_K1363606 Version 1 (Component)key-1-of and-gate of RNA logic gates
cinRBBa_R0077 Version 1 (Component)Promoter (cinR and HSL regulated, RBS+)
BBa_K779504BBa_K779504 Version 1 (Component)Long scrambled input strand MammoBlock
BBa_K208010BBa_K208010 Version 1 (Component)Lac Promoter (BBa_R0010) and RBS (B0034)
BBa_I3701BBa_I3701 Version 1 (Component)AraC input device for OR gate (B0034.C0080.B0015)
BBa_K2116011BBa_K2116011 Version 1 (Component)AND gate regulated by Nitric Oxide and 3OC6HSL
BBa_K1132034BBa_K1132034 Version 1 (Component)AND gate (BBa_K1132003) with RFP