Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

pT7
BBa_K525998 Version 1 (Component)
Promoter T7 and RBS

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1886011
BBa_K1886011 Version 1 (Component)
AND GATE-input_AHL+red light

BBa_K568001
BBa_K568001 Version 1 (Component)
Optogenetical AND-Gate red/blue light

BBa_K322124
BBa_K322124 Version 1 (Component)
Red light sensor Cph8 (from Coliroid) with RBS

BBa_K1886010
BBa_K1886010 Version 1 (Component)
AND GATE-input_AHL+green light

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

eforRed
BBa_K592012 Version 1 (Component)
eforRed, red chromoprotein

BBa_K592016
BBa_K592016 Version 1 (Component)
B0034-YF1-B0034-FixJ, blue light sensor and RR with RBS

BBa_K1886013
BBa_K1886013 Version 1 (Component)
AND GATE-input_DPD+ red light

BBa_J33207
BBa_J33207 Version 1 (Component)
lac promoter and lacZ

RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

BBa_K1886016
BBa_K1886016 Version 1 (Component)
AND GATE-input_ara+IPTG

BBa_K851002
BBa_K851002 Version 1 (Component)
pBAD-pXyl AND Gate

BBa_K568000
BBa_K568000 Version 1 (Component)
Red light sensor

BBa_K568004
BBa_K568004 Version 1 (Component)
Optogenetical AND-Gate blue light - without first promoter - choose your first input

YF1
BBa_K592004 Version 1 (Component)
YF1 blue-light sensor protein

BBa_K1587008
BBa_K1587008 Version 1 (Component)
Red light biosensor

rhII
BBa_C0070 Version 1 (Component)
autoinducer synthetase for N-butyryl-HSL (BHL) and HHL

BBa_K1649002
BBa_K1649002 Version 1 (Component)
Red light sensor with TetR not gate and GFP reporter

BBa_I741005
BBa_I741005 Version 1 (Component)
XylR Transcriptional Regulator Right Facing

BBa_K608002
BBa_K608002 Version 1 (Component)
strong Promoter and strong RBS

BBa_K1520500
BBa_K1520500 Version 1 (Component)
red fluorescent protein

BBa_K1886014
BBa_K1886014 Version 1 (Component)
AND GATE-input_red light+IPTG

BBa_K1886012
BBa_K1886012 Version 1 (Component)
AND GATE-input_DPD+green light

BBa_K1886015
BBa_K1886015 Version 1 (Component)
AND GATE-input_green light+IPTG

BBa_K325210
BBa_K325210 Version 1 (Component)
Red Firefly Luciferase and LRE<BR><i>L. Cruciata<BR>(E. coli optimised)</i>

BBa_K892001
BBa_K892001 Version 1 (Component)
red light responsive reporter driving red light luciferase

BBa_I750009
BBa_I750009 Version 1 (Component)
Red light => Response

BBa_K1797001
BBa_K1797001 Version 1 (Component)
Red Light Sensing System

BBa_I711006
BBa_I711006 Version 1 (Component)
Red light sensor

BBa_K1649000
BBa_K1649000 Version 1 (Component)
red light sensor

mCherry
BBa_J06702 Version 1 (Component)
mCherry, bacterial with RBS and forward terminator