Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
cI+luxRBBa_R0065 Version 1 (Component)Promoter (lambda cI and luxR regulated -- hybrid)
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
EcoRIEcoRI Version 1 (Component) NheINheI Version 1 (Component) PacIPacI Version 1 (Component) SpeISpeI Version 1 (Component) BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K608002BBa_K608002 Version 1 (Component)strong Promoter and strong RBS
mCherryBBa_J06702 Version 1 (Component)mCherry, bacterial with RBS and forward terminator
BBa_K228009BBa_K228009 Version 1 (Component)AraC protein(reversed sequence) and Pbad promoter
BBa_K081005BBa_K081005 Version 1 (Component)constitutive promoter family member and RBS
cinRBBa_R0078 Version 1 (Component)Promoter (cinR and HSL regulated)
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
cinRBBa_R0077 Version 1 (Component)Promoter (cinR and HSL regulated, RBS+)
BBa_K208010BBa_K208010 Version 1 (Component)Lac Promoter (BBa_R0010) and RBS (B0034)
Pveg-spoVGBBa_K143053 Version 1 (Component)Promoter Pveg and RBS spoVG for B. subtilis
BBa_K216005BBa_K216005 Version 1 (Component)PyeaR promoter, responsive to nitrate, nitrite and nitric oxide
lux pRBBa_R1062 Version 1 (Component)Promoter, Standard (luxR and HSL regulated -- lux pR)<br>
BBa_K390018BBa_K390018 Version 1 (Component)sigA promoter, 5'UTR, and RBS
BBa_K1045010BBa_K1045010 Version 1 (Component)RBS BBa_B0034 with inversed Pre- and Suffix
BBa_I732092BBa_I732092 Version 1 (Component)Double Repoters (LacZ-alpha and RFP)
BBa_K390017BBa_K390017 Version 1 (Component)psbA2 promoter, 5'UTR, and RBS
BBa_K929002BBa_K929002 Version 1 (Component)modified AID with CMV and hGH-polyA
BBa_K592016BBa_K592016 Version 1 (Component)B0034-YF1-B0034-FixJ, blue light sensor and RR with RBS
BBa_K929003BBa_K929003 Version 1 (Component)modified AID with CMV, hGH-polyA and eGFP
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
GFP-AIDBBa_K812010 Version 1 (Component)GFP fused with AID-tag (ubuquitinase E3 OsTirI recoginition domain)
CMV AID pABBa_K929000 Version 1 (Component)AID with CMV promoter and hGH-polyadenylation signal sequence
BBa_K395160BBa_K395160 Version 1 (Component)RBS-CmR(no promoter and terminator)
pSB1A2BBa_K300988 Version 1 (Component)pSB1A2 without Prefix and Suffix
AIDBBa_K176190 Version 1 (Component)Activation-Induced (Cytidine) Deaminase (standard version of K103001)
BBa_K554006BBa_K554006 Version 1 (Component)QseB and QseC
pANDBBa_J58100 Version 1 (Component)AND-type promoter synergistically activated by cI and CRP
AldBO_26710 Version 1 (Component) BBa_J24675BBa_J24675 Version 1 (Component)PoPS-> lacI and mCherry
BBa_K737026BBa_K737026 Version 1 (Component)Promoter that can be induced by phosphate and carbon starvation.