Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pBad/araCBBa_I0500 Version 1 (Component)Inducible pBad/araC promoter
GFP reportBBa_E0240 Version 1 (Component)GFP generator
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
GFP generaBBa_E0840 Version 1 (Component)GFP generator
AraBBa_K808000 Version 1 (Component)araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
TnrABO_11240 Version 1 (Component) BBa_K638401BBa_K638401 Version 1 (Component)Arabinose inducible TorA Export Tagged Reflectin A1 Poly His generator
BBa_K638202BBa_K638202 Version 1 (Component)Arabinose inducible Poly-His Reflectin A1 generator
LuxRBBa_I0462 Version 1 (Component)luxR Protein Generator
BBa_K638201BBa_K638201 Version 1 (Component)Arabinose inducible Poly-His Reflectin A1 generator
BBa_K638403BBa_K638403 Version 1 (Component)Arabinose inducible TorA-Reflectin A1-sfGFP generator
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
BBa_K638001BBa_K638001 Version 1 (Component)Reflectin A1 from Loligo
BBa_K638301BBa_K638301 Version 1 (Component)Arabinose inducible Reflectin A1-sfGFP fusion generator
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_K731201BBa_K731201 Version 1 (Component)Arabinose inducible araC-pBAD promoter
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_K081014BBa_K081014 Version 1 (Component)RFP protein generator - PoPS->RFP
BBa_K638103BBa_K638103 Version 1 (Component)Arabinose inducible Reflectin 1B generator
BBa_K638102BBa_K638102 Version 1 (Component)Arabinose inducible Reflectin A2 generator
BBa_K1404007BBa_K1404007 Version 1 (Component)p70-CsgA-His, His-tagged curli generator
BBa_K1404008BBa_K1404008 Version 1 (Component)p70-CsgA-His*2, double His-tagged curli generator
BBa_K914003BBa_K914003 Version 1 (Component)L-rhamnose-inducible promoter (pRha)
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
BBa_K130002BBa_K130002 Version 1 (Component)torA export
BBa_J69601BBa_J69601 Version 1 (Component)Arabinose-inducible CI Generator
BBa_J69701BBa_J69701 Version 1 (Component)Arabinose-inducible lacI Generator
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
HisBBa_K157011 Version 1 (Component)His affinity tag; Freiburg standard
HIC generaBBa_K1602020 Version 1 (Component)Inducible generator of Humicola insolens cutinase (HIC) with N-terminal His-Tag
BBa_K233307BBa_K233307 Version 1 (Component)TorA- This part is a export tag that utilizes the Twin Arginine Transport pathway(TAT)
BBa_K249001BBa_K249001 Version 1 (Component)Arabinose Induced Inverter
Hin LVABBa_J31001 Version 1 (Component)DNA invertase Hin tagged with LVA
MorABBa_K1615000 Version 1 (Component)Morphine-6-dehydrogenase RFC25
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
BBa_K638101BBa_K638101 Version 1 (Component)Arabinose inducible Reflectin A1 generator
BBa_J29008BBa_J29008 Version 1 (Component)arabinose inducible CrtI protein generator
BBa_J69536BBa_J69536 Version 1 (Component)Arabinose-inducible tetR Generator
BBa_K737051BBa_K737051 Version 1 (Component)IPTG inducible GFP Generator
BBa_J69534BBa_J69534 Version 1 (Component)Arabinose inducible lacI generator