Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
GFPBBa_E0040 Version 1 (Component)green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
eyfpBBa_E0030 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
CcpABO_11480 Version 1 (Component) LexABO_11408 Version 1 (Component) BBa_J70012BBa_J70012 Version 1 (Component)A BioScaffold Part (Uses PsrI), Protein Head Remover see Part Design page
BBa_J70042BBa_J70042 Version 1 (Component)6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
ComKBO_11197 Version 1 (Component) BBa_J70010BBa_J70010 Version 1 (Component)A BioScaffold Part (Uses PpiI), for offset see Part Design page
YFPBBa_E0032 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
ecfpBBa_E0020 Version 1 (Component)engineered cyan fluorescent protein derived from A. victoria GFP
SpoIILBO_26996 Version 1 (Component) AbrBBO_9091 Version 1 (Component) BBa_J70312BBa_J70312 Version 1 (Component)E0031 (RBS+EYFP), B0014 (terminator)
GerEBO_11469 Version 1 (Component) BBa_J70015BBa_J70015 Version 1 (Component)PpiI and PsrI LASR Left Testing Part
TnrABO_11240 Version 1 (Component) SpoIIIDBO_9027 Version 1 (Component) BBa_J07022BBa_J07022 Version 1 (Component)sigma factor FecI controls iron transport
BBa_J07072BBa_J07072 Version 1 (Component)strong RBS+FecR'+terminator
BBa_J07012BBa_J07012 Version 1 (Component)scFv anti-fluorescein [4-4-20]
BBa_J70052BBa_J70052 Version 1 (Component)Right Library Insert Preparation Part (To use with J70050, and J70040)
FurBO_11498 Version 1 (Component) PhoPBO_26226 Version 1 (Component) BBa_J70011BBa_J70011 Version 1 (Component)LASR3 (actually LASR1)
BBa_J70016BBa_J70016 Version 1 (Component)PpiI Right Testing Part
BBa_J70019BBa_J70019 Version 1 (Component)PsrI Right Testing Part for LASR parts
BBa_J07014BBa_J07014 Version 1 (Component)scFv anti-fluorescein [4M5.3]
ECFPBBa_E0022 Version 1 (Component)enhanced cyan fluorescent protein derived from A. victoria GFP
BBa_J07013BBa_J07013 Version 1 (Component)scFv anti-fluorescein [S101A]
BBa_J07019BBa_J07019 Version 1 (Component)FecA Promoter (with Fur box)
GENEART pGBBa_J70022 Version 1 (Component)GENEART pGA4 plasmid
BBa_J70070BBa_J70070 Version 1 (Component)BBa_J70012 (PsrI) protein fusion test part
//testtest Version 1 (Collection) BBa_J70002BBa_J70002 Version 1 (Component)TetM recoded for dual E. coli/Mesoplasma expression
BBa_J70014BBa_J70014 Version 1 (Component)LASR PsrI type insert
BBa_J70013BBa_J70013 Version 1 (Component)LASR PpiI type insert
BBa_J70612BBa_J70612 Version 1 (Component)RFC12 Double Terminator
BBa_J07011BBa_J07011 Version 1 (Component)ToxR promoter (ctx) controlling GFP
BBa_J70032BBa_J70032 Version 1 (Component)A Composite BioScaffold Part (PpiI and PsrI) for Protein Fusions (see Design Page)
BBa_J72012BBa_J72012 Version 1 (Component){M.BglII} in BBb