SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_M36034BBa_M36034 Version 1 (Component)BCD02 - Bicistronic Design 02
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_M36009BBa_M36009 Version 1 (Component)5' Bicistronic UTR (strong), does not include ATG start
BBa_J119024BBa_J119024 Version 1 (Component)BD18 bicistronic translational junction - Medium effiency
BBa_M36595BBa_M36595 Version 1 (Component)Bicistronic design RBS
BBa_K1114110BBa_K1114110 Version 1 (Component)Bicistronic design RBS 13, MoClo Format with BC fusion sites
BBa_K1114109BBa_K1114109 Version 1 (Component)Bicistronic design RBS 12, MoClo Format with BC fusion sites
BBa_K1114111BBa_K1114111 Version 1 (Component)Bicistronic design RBS 16, MoClo Format with BC fusion sites
BBa_K1114108BBa_K1114108 Version 1 (Component)Bicistronic design RBS 8, MoClo Format with BC fusion sites
Kozak & stBBa_J63003 Version 1 (Component)designed yeast Kozak sequence
BBa_K1779206BBa_K1779206 Version 1 (Component)mamAB Operon 02
BBa_K1114106BBa_K1114106 Version 1 (Component)Bicistronic Design RBS 1, MoClo Format with BC fusion sites
BBa_J119025BBa_J119025 Version 1 (Component)BD2 bicistronic translational junction - Lowest efficiency
BBa_J119028BBa_J119028 Version 1 (Component)BD24 bicistronic translational junction - Highest efficiency
BBa_J119027BBa_J119027 Version 1 (Component)BD21 bicistronic translational junction - High efficiency
BBa_J119026BBa_J119026 Version 1 (Component)BD10 bicistronic translational junction - Low efficiency
BBa_M36450BBa_M36450 Version 1 (Component)Bicistronic RBS - pFAB1692
BBa_M36001BBa_M36001 Version 1 (Component)5' Bicistronic UTR (medium), does not include ATG start
BBa_M36192BBa_M36192 Version 1 (Component)Bicistronic Linker Sequence
BBa_M36405BBa_M36405 Version 1 (Component)Bicistronic RBS (medium) pFAB1646
BBa_M36516BBa_M36516 Version 1 (Component)Bicistronic RBS #5
BD14BBa_M36204 Version 1 (Component)Bicistronic RBS (BD14)
BBa_M36542BBa_M36542 Version 1 (Component)BCD22 - RBS
BBa_M36724BBa_M36724 Version 1 (Component)5' Bicistronic UTR (strong), does not include ATG start
BCRBSBBa_M36293 Version 1 (Component)5' Bicistronic UTR, includes ATG start
BBa_M36289BBa_M36289 Version 1 (Component)medium 5' Bicistronic UTR (BD8)
BBa_K1401609BBa_K1401609 Version 1 (Component)pLac - BCD2 - GFP
BBa_M36237BBa_M36237 Version 1 (Component)5' Bicistronic UTR (no ATG)
BBa_M36521BBa_M36521 Version 1 (Component)strong 5' bicistronic UTR, with ATG at end
BBa_M36070BBa_M36070 Version 1 (Component)Bicistronic RBS - BIOFAB ID: apFAB681 (BCD1)
BBa_K264001BBa_K264001 Version 1 (Component)Modular UP-element Design 2
BBa_K1401614BBa_K1401614 Version 1 (Component)pLac - BCD2 - araC - GFP
BBa_M36000BBa_M36000 Version 1 (Component)5' Bicistronic UTR (weak), does not include ATG start
BBa_K264003BBa_K264003 Version 1 (Component)Modular UP-element Design 4
BBa_I731017BBa_I731017 Version 1 (Component)Ptet bicistronic 3OC6HSL Sender + mCherry
BBa_K2141003BBa_K2141003 Version 1 (Component)yfp-bicistronic anti-meth antibody-cfp
BBa_J70010BBa_J70010 Version 1 (Component)A BioScaffold Part (Uses PpiI), for offset see Part Design page
BBa_M36361BBa_M36361 Version 1 (Component)5' Bicistronic UTR (apFAB866, GENE10_BCD2), No ATG Start
BBa_M36196BBa_M36196 Version 1 (Component)Bicistronic Lig/MnP -Frost/Thayer
IBMc180IBMc180 Version 1 (Component)pSB1A3-BbsI-10aa-acVHH-T-cat-PBAD(SapI)-RiboJ-BCD22-acVHH-10aa-SapI
BBa_K1401607BBa_K1401607 Version 1 (Component)pLac - BCD2 - tetR
BBa_K1401612BBa_K1401612 Version 1 (Component)pLac - BCD2 - araC
BBa_K1401610BBa_K1401610 Version 1 (Component)pLac - BCD2 - YFP
BBa_K1401606BBa_K1401606 Version 1 (Component)pBad- BCD2 - RFP
BBa_K1401611BBa_K1401611 Version 1 (Component)pTet - BCD2 - RFP
BBa_J70012BBa_J70012 Version 1 (Component)A BioScaffold Part (Uses PsrI), Protein Head Remover see Part Design page
BBa_K1401616BBa_K1401616 Version 1 (Component)pLac - BCD2 - tetR- GFP