SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pT7BBa_K525998 Version 1 (Component)Promoter T7 and RBS
BBa_J95004BBa_J95004 Version 1 (Component)Bioluminescence based RBS characterization kit F
T7 RBSBBa_K1362090 Version 1 (Component)strong T7 RBS
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
//rbsrbs Version 1 (Collection) BBa_J95002BBa_J95002 Version 1 (Component)Bioluminescence based promoter measurement Kit F
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
BBa_J95003BBa_J95003 Version 1 (Component)Bioluminescence based Promoter characterization Kit R
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
BBa_E0430BBa_E0430 Version 1 (Component)EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)
BBa_J95005BBa_J95005 Version 1 (Component)One of two Bioluminescence based BioBrick RBS characterization kits
RBS_cassetteRBS_cassette Version 1 (Component)AvrII restriction site (cctagg), overlapped with RBS (aggagga)
BBa_J95014BBa_J95014 Version 1 (Component)Bioluminescence based terminator measurement kit
eyfpBBa_E0031 Version 1 (Component)EYFP (RBS+ LVA-)
BBa_K165002BBa_K165002 Version 1 (Component)Kozak sequence (yeast RBS)
PBS_F24PBS_F24 Version 1 (Component) BBa_K611013BBa_K611013 Version 1 (Component)pLacI Characterization Construct
KatBBa_I14034 Version 1 (Component)P(Kat)
ecfpBBa_E0021 Version 1 (Component)ECFP (RBS+ LVA-)
RBS-GFP-TeBBa_I763020 Version 1 (Component)RBS-GFP (+LVA Tag)-Terminators
rbs+crtZBBa_I742158 Version 1 (Component)crtZ (beta-carotene hydroxylase) with native rbs
OriTFBBa_J01002 Version 1 (Component)OriT-F (Origin of Transfer for the F-plasmid nic region)
BBa_K608002BBa_K608002 Version 1 (Component)strong Promoter and strong RBS
BBa_E0422BBa_E0422 Version 1 (Component)ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)
BBa_K1493601BBa_K1493601 Version 1 (Component)Kis Antitoxin (Kis-Kid Toxin-Antitoxin System)
BBa_E0420BBa_E0420 Version 1 (Component)ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)
BBa_K879021BBa_K879021 Version 1 (Component)rbs based on B0034
BBa_K199118BBa_K199118 Version 1 (Component)T7 promoter + RBS + RFP
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
BBa_B0035BBa_B0035 Version 1 (Component)RBS (B0030 derivative)
BBa_I20260BBa_I20260 Version 1 (Component)Measurement Kit Test of J23101