Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
ATGATG Version 1 (Component) BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
BBa_K1916013BBa_K1916013 Version 1 (Component)CBCR3 + intein-CBD tag
BBa_K1916012BBa_K1916012 Version 1 (Component)CBCR3 + intein-CBD tag
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_J04031BBa_J04031 Version 1 (Component)GFP w/LVA tag
BBa_K1916011BBa_K1916011 Version 1 (Component)CBCR2 + intein-CBD tag
BBa_K1916010BBa_K1916010 Version 1 (Component)CBCR2 + intein-CBD tag
BBa_K1916017BBa_K1916017 Version 1 (Component)CBCR6 + intein-CBD tag
BBa_K1916015BBa_K1916015 Version 1 (Component)CBCR4 + intein-CBD tag
BBa_K1916020BBa_K1916020 Version 1 (Component)CBCR9 + intein-CBD tag
BBa_K1916019BBa_K1916019 Version 1 (Component)CBCR8 + intein-CBD tag
BBa_K1916018BBa_K1916018 Version 1 (Component)CBCR8 + intein-CBD tag
BBa_K1916014BBa_K1916014 Version 1 (Component)CBCR4 + intein-CBD tag
BBa_K1916021BBa_K1916021 Version 1 (Component)CBCR9 + intein-CBD tag
BBa_K1916016BBa_K1916016 Version 1 (Component)CBCR6 + intein-CBD tag
HABBa_I712008 Version 1 (Component)HA affinity tag
NLSBBa_J176008 Version 1 (Component)NLS
BBa_K105012BBa_K105012 Version 1 (Component)10 aa flexible protein domain linker
PESTBBa_J176018 Version 1 (Component)PEST
linkerBBa_K133132 Version 1 (Component)8 aa protein domain linker
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
BBa_K1916022BBa_K1916022 Version 1 (Component)CBCR11 + intein-CBD tag
BBa_K1916005BBa_K1916005 Version 1 (Component)Ga0100955_11928g3 + intein-CBD tag
BBa_K1916008BBa_K1916008 Version 1 (Component)Osc7112_5903g3 + intein-CBD tag
BBa_K1916023BBa_K1916023 Version 1 (Component)CBCR11 + intein-CBD tag
BBa_K1916009BBa_K1916009 Version 1 (Component)Osc7112_5903g3 + intein-CBD tag
BBa_K1916001BBa_K1916001 Version 1 (Component)NpF2164g5 + intein-CBD tag
BBa_K1916007BBa_K1916007 Version 1 (Component)Ga0039498_104087g2 + intein-CBD tag
BBa_K1916000BBa_K1916000 Version 1 (Component)NpF2164g5 + intein-CBD tag
BBa_K1916003BBa_K1916003 Version 1 (Component)Cha6605_4344g2 + intein-CBD tag
BBa_K1916006BBa_K1916006 Version 1 (Component)Ga0039498_104087g2 + intein-CBD tag
BBa_K1916002BBa_K1916002 Version 1 (Component)Cyan7427_1390g3 + intein-CBD tag
BBa_K1916004BBa_K1916004 Version 1 (Component)Ga0100955_11928g3 + intein-CBD tag
NLSmycSTOPBBa_J176031 Version 1 (Component)NLS myc stop
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_M1600BBa_M1600 Version 1 (Component)CXCR3
BBa_K1462501BBa_K1462501 Version 1 (Component)GBD domian + Linker
InteinBBa_K300004 Version 1 (Component)Engineered pH-inducible intein (codon optimized for E. coli) - internal domain
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
BBa_K416003BBa_K416003 Version 1 (Component)Yeast Secretion Tag
RBS-GFP-TeBBa_I763020 Version 1 (Component)RBS-GFP (+LVA Tag)-Terminators
BBa_J70042BBa_J70042 Version 1 (Component)6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
NpuDnaE(N)BBa_K1362400 Version 1 (Component)NpuDnaE N-Intein cloning piece