SynBioHub

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

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cI lam
BBa_R0051 Version 1 (Component)
promoter (lambda cI regulated)

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

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cI 434
BBa_C0052 Version 1 (Component)
cI repressor from phage 434 (+LVA)

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BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

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cI 434
BBa_R0052 Version 1 (Component)
Promoter (434 cI regulated)

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cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

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cI HK022
BBa_C0050 Version 1 (Component)
cI repressor from phage HK022 (+LVA?)

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sRNA_cassette
sRNA_cassette Version 1 (Component)

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BBa_I1023
BBa_I1023 Version 1 (Component)
CI(2) IS10 asRNA

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BBa_I1063
BBa_I1063 Version 1 (Component)
CI(2) IS10 asRNA

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sRNA_target
sRNA_target Version 1 (Component)

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BBa_I1033
BBa_I1033 Version 1 (Component)
CI(1) IS10 asRNA

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BBa_I1013
BBa_I1013 Version 1 (Component)
CI(1) IS10 asRNA

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BBa_P0451
BBa_P0451 Version 1 (Component)
PoPS -> cI (lambda) [S0153]

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BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

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Prm +
BBa_I12006 Version 1 (Component)
Modified lamdba Prm promoter (repressed by 434 cI)

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cI
BBa_I9200 Version 1 (Component)
cI lambda

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cI HK022
BBa_R0050 Version 1 (Component)
Promoter (HK022 cI regulated)

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cI TP901
BBa_C0075 Version 1 (Component)
TP901 cI repressor from phage TP901-1 (+LVA)

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BBa_K554004
BBa_K554004 Version 1 (Component)
IL10

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BBa_I1041
BBa_I1041 Version 1 (Component)
CI(2) "KISS" asRNA

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BBa_I1042
BBa_I1042 Version 1 (Component)
CI(2) "micRNA" asRNA

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BBa_K228236
BBa_K228236 Version 1 (Component)
cI->Terminator

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BBa_I1032
BBa_I1032 Version 1 (Component)
CI(1) "micRNA" asRNA

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BBa_I1031
BBa_I1031 Version 1 (Component)
CI(1) "KISS" asRNA

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cI
BBa_Q04511 Version 1 (Component)
QPI (B0034.C0051.B0015.R0065)

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BBa_I1044
BBa_I1044 Version 1 (Component)
CI(2) "KISS" asRNA without Promoter

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BBa_P0455
BBa_P0455 Version 1 (Component)
RBS.Lambda cI LVA+.Term

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BBa_P0151
BBa_P0151 Version 1 (Component)
PoPS -> cI (lambda) [S0165]

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BBa_C0056
BBa_C0056 Version 1 (Component)
cI repressor from phage 434 (no LVA)

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BBa_I1012
BBa_I1012 Version 1 (Component)
CI(1) micRNA asRNA

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BBa_J07040
BBa_J07040 Version 1 (Component)
Threshold: Activation module (IS10-type cI antisense)

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BBa_P0152
BBa_P0152 Version 1 (Component)
PoPS -> cI (434) [S0166]

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cI TP901
BBa_R0075 Version 1 (Component)
Promoter (TP901 cI regulated)

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SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

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BBa_K1017404
BBa_K1017404 Version 1 (Component)
sRNA-2

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BBa_K2120105
BBa_K2120105 Version 1 (Component)
reverse cI

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BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

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BBa_K313032
BBa_K313032 Version 1 (Component)
asRNA measurement device 2

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cI 434
BBa_R1052 Version 1 (Component)
Promoter, Standard (434 cI regulated)<br>

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pLac+cI
BBa_I763005 Version 1 (Component)
cI repressor (+LVA) regulated by pLac Promoter

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cI HK022
BBa_R1050 Version 1 (Component)
Promoter, Standard (HK022 cI regulated) <br>

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BBa_K1017402
BBa_K1017402 Version 1 (Component)
sRNA+rRBS-2

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BBa_J34807
BBa_J34807 Version 1 (Component)
Ci repressor fusion 2

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BBa_K510036
BBa_K510036 Version 1 (Component)
Improved Flip Flop (Module II: asRNA)

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BBa_I1011
BBa_I1011 Version 1 (Component)
CI(1) "KISS" asRNA without promoter

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