Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
His-StopBBa_K133133 Version 1 (Component)His affinity tag-stop
BBa_K811002BBa_K811002 Version 1 (Component)ClyA (C-terminus his tagged)
tetA(C)bBBa_J31006 Version 1 (Component)tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
RFC105 ZBBa_K1362421 Version 1 (Component)C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
BBa_K811001BBa_K811001 Version 1 (Component)ClyA (N-terminus his tagged)
BBa_K249006BBa_K249006 Version 1 (Component)Fusion EYFP with C-terminal Arginine Tag
His6BBa_K1362431 Version 1 (Component)N-terminal His6 (C-Intein)
BBa_K331033BBa_K331033 Version 1 (Component)Tet Repressible C-terminal Arg Tagged ECFP (no terminator)
BBa_K844000BBa_K844000 Version 1 (Component)10x-Histidine (10x-His) Tag with double stop codon (TAATAA)
BBa_K331031BBa_K331031 Version 1 (Component)Tet Repressible C-terminal Arg Tagged EYFP (no terminator)
HinBBa_J31000 Version 1 (Component)DNA-invertase Hin from Salmonella typhimurium
HisBBa_K157011 Version 1 (Component)His affinity tag; Freiburg standard
BBa_K1321340BBa_K1321340 Version 1 (Component)Double CBD (dCBD) with N-terminal linker
Hin LVABBa_J31001 Version 1 (Component)DNA invertase Hin tagged with LVA
BBa_K331002BBa_K331002 Version 1 (Component)ECFP with C-terminal Arginine Tag
GFP-XylEBBa_K316006 Version 1 (Component)N-terminus his tagged-GFP-XylE fusion protein
REBBa_J3101 Version 1 (Component)Recombinational Enhancer (RE) for Hin/Hix inverting
BBa_K1404007BBa_K1404007 Version 1 (Component)p70-CsgA-His, His-tagged curli generator
RFC105 CCBBa_K1362419 Version 1 (Component)C-terminal splicing overhang CAAC=1/3?+Asn RFC[105] standard overhang CC
BBa_B0053BBa_B0053 Version 1 (Component)Terminator (His)
BBa_K1333005BBa_K1333005 Version 1 (Component)M13 bacteriophage g8p with a FLAG tag on C-terminal
CBDcipABBa_K1615111 Version 1 (Component)CBDcipA with N and C-terminal linker in RFC25
BBa_K1321014BBa_K1321014 Version 1 (Component)CBDCipA with N and C-terminal linker
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
BBa_K929202BBa_K929202 Version 1 (Component)EGF-Receptor_3rd domain with PelB leadersequence, His-tag and C-terminal Sortase motif
BBa_K1404008BBa_K1404008 Version 1 (Component)p70-CsgA-His*2, double His-tagged curli generator
BBa_K1491023BBa_K1491023 Version 1 (Component)C-terminus of T7 RNA Polymerase
His-ScaffoBBa_K1602027 Version 1 (Component)Protein scaffold with N-terminal HisTag
BBa_K772001BBa_K772001 Version 1 (Component)EpCAM Binding Dock: C-terminus
BBa_K331035BBa_K331035 Version 1 (Component)C-terminal Arg Tagged EYFP with transcriptional terminator
BBa_K554002BBa_K554002 Version 1 (Component)HlyA secretion signal peptide
BBa_K1092106BBa_K1092106 Version 1 (Component)RFP C terminus
BBa_K1491030BBa_K1491030 Version 1 (Component)His Tagged T7 RNA Polymerase
BBa_K249021BBa_K249021 Version 1 (Component)Target C-terminal YFP into Lumazine
BBa_K1159201BBa_K1159201 Version 1 (Component)Splitted and engineered C-terminal FbaB for isopeptide bound formation (SpyTag) in RFC[25]
NpuDnaE(C)BBa_K1362401 Version 1 (Component)NpuDnaE C-Intein cloning piece
BBa_K2182001BBa_K2182001 Version 1 (Component)His Tagged NOX
eYFP_SH3liBBa_K1602038 Version 1 (Component)eYFP with C-terminal SH3 ligand and RBS BBa_B0034
BBa_K249025BBa_K249025 Version 1 (Component)Target C-terminal YFP and C-terminal CFP into Lumazine