SynBioHub

Public

GFP
GFP Version 1 (Unknown)
Organism: Cryptococcus neoformans serotype A H99S

Public

GFP_SBOLDesignerActivity
GFP_SBOLDesignerActivity Version 1 (Unknown)

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212

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pBad/araC
BBa_I0500 Version 1 (Component)
Inducible pBad/araC promoter

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BBa_I13453
BBa_I13453 Version 1 (Component)
Pbad promoter

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BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

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pBAD
BBa_K206000 Version 1 (Component)
pBAD strong

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BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

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YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

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GFP report
BBa_E0240 Version 1 (Component)
GFP generator

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eyfp
BBa_E0030 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

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GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

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BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

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ecfp
BBa_E0020 Version 1 (Component)
engineered cyan fluorescent protein derived from A. victoria GFP

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mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

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BBa_K135000
BBa_K135000 Version 1 (Component)
pCpxR (CpxR responsive promoter)

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BBa_K1486013
BBa_K1486013 Version 1 (Component)
CpxR-IFP[2] under pBAD

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BBa_K1486015
BBa_K1486015 Version 1 (Component)
IFP[2]-CpxR under pBAD

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Ara
BBa_K808000 Version 1 (Component)
araC-Pbad - Arabinose inducible regulatory promoter/repressor unit

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ECFP
BBa_E0022 Version 1 (Component)
enhanced cyan fluorescent protein derived from A. victoria GFP

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BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

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BBa_K1486000
BBa_K1486000 Version 1 (Component)
CpxR coding region

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BBa_K1486012
BBa_K1486012 Version 1 (Component)
CpxR-IFP[1] under pBAD

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BBa_K1486014
BBa_K1486014 Version 1 (Component)
IFP[1]-CpxR under pBAD

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BBa_K228009
BBa_K228009 Version 1 (Component)
AraC protein(reversed sequence) and Pbad promoter

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BFP
BBa_K592100 Version 1 (Component)
Blue Fluorescent Protein (mTagBFP)

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RBS-RFP
BBa_K093005 Version 1 (Component)
RFP with RBS

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BBa_J44002
BBa_J44002 Version 1 (Component)
pBAD reverse

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gfp_cassette
gfp_cassette Version 1 (Component)

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GFP
BBa_K145015 Version 1 (Component)
GFP with LVA tag

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YFP
BBa_K592101 Version 1 (Component)
Yellow Fluorescent Protein (YFP)

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BBa_K208000
BBa_K208000 Version 1 (Component)
GFP

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BBa_I746916
BBa_I746916 Version 1 (Component)
superfolder GFP coding sequence

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IFP
BBa_K256008 Version 1 (Component)
Infrared Protein (IFP 1.4)

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BBa_K339007
BBa_K339007 Version 1 (Component)
CpxR Reporter

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BBa_K206001
BBa_K206001 Version 1 (Component)
pBAD weak

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BBa_K1486007
BBa_K1486007 Version 1 (Component)
IFP[2]

Public

BBa_K081014
BBa_K081014 Version 1 (Component)
RFP protein generator - PoPS->RFP

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yfp
BBa_K165005 Version 1 (Component)
Venus YFP, yeast optimized for fusion

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BBa_K112900
BBa_K112900 Version 1 (Component)
Pbad

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BBa_K325909
BBa_K325909 Version 1 (Component)
Lux Operon (under pBAD)<BR><i>Vibrio Fischeri</i>

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BBa_J54103
BBa_J54103 Version 1 (Component)
Promoterless-GFP(A)

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mRFPr
BBa_J31008 Version 1 (Component)
RFP reverse

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BBa_I746320
BBa_I746320 Version 1 (Component)
GFP under control of PF promoter

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BBa_I746324
BBa_I746324 Version 1 (Component)
GFP under control of Psid promoter

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BBa_K584000
BBa_K584000 Version 1 (Component)
pBAD + GFP generator

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BBa_K1486047
BBa_K1486047 Version 1 (Component)
CpxR promoter RV

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BBa_K145280
BBa_K145280 Version 1 (Component)
GFP-LVA under TetR control

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