SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Scar25 ATG
BBa_K1319106 Version 1 (Component)
RFC 25 Translation Start Scar Sequence

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

RFC105 A
BBa_K1362414 Version 1 (Component)
N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A

BBa_K809601
BBa_K809601 Version 1 (Component)
GAL promoter (kozak) without start codon ATG

BBa_M36009
BBa_M36009 Version 1 (Component)
5' Bicistronic UTR (strong), does not include ATG start

BBa_I716212
BBa_I716212 Version 1 (Component)
Cre (GTG start)

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

T7start
BBa_J18912 Version 1 (Component)
T7 promoter + RBS + START

T7rnap
BBa_I716103 Version 1 (Component)
T7rnap (T7 RNA Polymerase) - ATG Start Codon

RFC105 A
BBa_K1362440 Version 1 (Component)
N-terminal start overhang (T)(A)-GATG=RBS+Start RFC[105] A

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

BBa_M36001
BBa_M36001 Version 1 (Component)
5' Bicistronic UTR (medium), does not include ATG start

BBa_M36282
BBa_M36282 Version 1 (Component)
5' Bicistronic UTR, includes ATG start codon

BBa_K299801
BBa_K299801 Version 1 (Component)
standard biobrick scar (if next sequence does NOT start with ATG)

BBa_K844006
BBa_K844006 Version 1 (Component)
Spider Silk 1x Subunit "W" with Met (ATG) start codon

BBa_K2066518
BBa_K2066518 Version 1 (Component)
mCherry (with start codon)

cre
BBa_K112102 Version 1 (Component)
Cre enzyme without start or stop codons

BBa_K1333002
BBa_K1333002 Version 1 (Component)
M13 bacteriophage g3p with start codon of "ATG" and a FLAG tag on C-terminal

BBa_M36724
BBa_M36724 Version 1 (Component)
5' Bicistronic UTR (strong), does not include ATG start

BBa_J36841
BBa_J36841 Version 1 (Component)
Streptavidin, wild-type core + His6 tag (no start codon)

BBa_K284031
BBa_K284031 Version 1 (Component)
Cre Recombinase without start codon

BCRBS
BBa_M36293 Version 1 (Component)
5' Bicistronic UTR, includes ATG start

T7rnap-G
BBa_I716104 Version 1 (Component)
T7rnap (T7 RNA Polymerase) - GTG Start Codon

BBa_I716015
BBa_I716015 Version 1 (Component)
RFP without start ATG

BBa_K112100
BBa_K112100 Version 1 (Component)
Cre enzyme without start codon

STAR
BBa_K1893013 Version 1 (Component)
Small transcription activating RNA (STAR)

CHE
BBa_K256023 Version 1 (Component)
Cholesteryl Esterase (CHE)

CRP
BBa_J58112 Version 1 (Component)
CRP protein

BBa_M36000
BBa_M36000 Version 1 (Component)
5' Bicistronic UTR (weak), does not include ATG start

BBa_I716210
BBa_I716210 Version 1 (Component)
BamHI endonuclease without start codon

BBa_I718008
BBa_I718008 Version 1 (Component)
araC-pBad-rbs-cre

BBa_M36361
BBa_M36361 Version 1 (Component)
5' Bicistronic UTR (apFAB866, GENE10_BCD2), No ATG Start

Cre
BBa_I716438 Version 1 (Component)
{rbs1-A}{GTG.Cre}{b0015 TT}

CWE
BBa_K1362433 Version 1 (Component)
CWE (extein)

BBa_K371045
BBa_K371045 Version 1 (Component)
ATG-MSF-NheI-MPF-GGT

CreA
BBa_I715000 Version 1 (Component)
Amino Half of Cre Recombinase (aka CreA)

CreB
BBa_I715001 Version 1 (Component)
Carboxl Half of Cre Recombinase (aka CreB)

BBa_K299800
BBa_K299800 Version 1 (Component)
standard biobrick scar (if next part starts with ATG)

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1085001
BBa_K1085001 Version 1 (Component)
RBS Start-codon SpiderSilkSubunitE1

RFC105 CN
BBa_K1362418 Version 1 (Component)
N-terminal GG-linker overhang <u>GGTG</u>=Gly+1/3Gly RFC[105] overhang CN

BBa_P10302
BBa_P10302 Version 1 (Component)
GVG