Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K1316015BBa_K1316015 Version 1 (Component)pRhamnose regulating csgB and csgA curli proteins
BBa_K1404005BBa_K1404005 Version 1 (Component)CsgA+tagHis*2, curli
BBa_K1361998BBa_K1361998 Version 1 (Component)Curli Fiber assembly associated protein CsgA, CsgC
BBa_K1404006BBa_K1404006 Version 1 (Component)p70-CsgA, curli generator
BBa_K1404008BBa_K1404008 Version 1 (Component)p70-CsgA-His*2, double His-tagged curli generator
BBa_K1404004BBa_K1404004 Version 1 (Component)CsgA+tagHis, curli
BBa_K1361997BBa_K1361997 Version 1 (Component)CsgB, curlin nucleator protein, minor subunit in curli complex
BBa_K1361992BBa_K1361992 Version 1 (Component)CsgE, CsgF, CsgG, the outer membrane secrete device for curli fiber
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_K1404007BBa_K1404007 Version 1 (Component)p70-CsgA-His, His-tagged curli generator
BBa_K1404003BBa_K1404003 Version 1 (Component)CsgA, Curli subunit
BBa_K1316018BBa_K1316018 Version 1 (Component)RBS + csgB curli-forming gene
BBa_K1361994BBa_K1361994 Version 1 (Component)Curli Fiber major monomer-CsgA with his tag
BBa_K1361999BBa_K1361999 Version 1 (Component)Curli Fiber major monomer-CsgA
BBa_K1361005BBa_K1361005 Version 1 (Component)CsgE, CsgF, CsgG, the outer membrane secrete device for curli fiber, at relatively low constitutive
BBa_K1361993BBa_K1361993 Version 1 (Component)CsgC, curli fiber secrete accessory molecules
BBa_K1583204BBa_K1583204 Version 1 (Component)Medium constitutive promoter + CsgB & CsgC
BBa_K1316019BBa_K1316019 Version 1 (Component)2nd part of Constitutive Anderson promoter + csgA curli gene
CsgABO_10743 Version 1 (Component) CurliBBa_K342000 Version 1 (Component)Curli Promoter induced by temperature, shaking speed and osmolarity,
BBa_K342003BBa_K342003 Version 1 (Component)OmpR234 protein, with higher effect on Curli promoter
csgABO_30839 Version 1 (Component) SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
CsgDBBa_K1019001 Version 1 (Component)CsgD: positive regulator of curlin genes
csgABO_3234 Version 1 (Component) CspABBa_K538003 Version 1 (Component)CspA (P. irgensii)
BBa_K1583203BBa_K1583203 Version 1 (Component)Low constitutive promoter + CsgB & CsgC
BBa_K1583205BBa_K1583205 Version 1 (Component)High constitutive promoter + CsgB & CsgC
BBa_K1316013BBa_K1316013 Version 1 (Component)pRhamnose regulating csgB + J23110 constitutive Anderson promoter regulating csgA
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)
BBa_K1763442BBa_K1763442 Version 1 (Component)MaSp1/2[1:2]-12(1C3)
BBa_K1763438BBa_K1763438 Version 1 (Component)MaSp1/2[2:1]-12(1C3)
BBa_K1583112BBa_K1583112 Version 1 (Component)pRha + CsgA & GFP in same operon
BBa_K1985012BBa_K1985012 Version 1 (Component)[CsgA-SS-Sup35NM]
CpgABO_9390 Version 1 (Component) csbABO_32097 Version 1 (Component)