SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_K2074024
BBa_K2074024 Version 1 (Component)
Cyt1(Codon optimization)-Extended FMDV

Public

BBa_K2074027
BBa_K2074027 Version 1 (Component)
Cry4Aa(Codon optimization)+Extended FMDV 2A+Cyt1(Codon optimization)

Public

BBa_K2074031
BBa_K2074031 Version 1 (Component)
Cry11Aa(Codon optimization)+Extended FMDV 2A+Cyt1(Codon optimization)

Public

BBa_K2074029
BBa_K2074029 Version 1 (Component)
Cry10Aa(Codon optimization)+Extended FMDV 2A+Cyt1(Codon optimization)

Public

BBa_K2074028
BBa_K2074028 Version 1 (Component)
Cry4Aa(Codon optimization)+Extended FMDV 2A+Cyt2(Codon optimization)

Public

BBa_K2074032
BBa_K2074032 Version 1 (Component)
Cry11Aa(Codon optimization)+Extended FMDV 2A+Cyt2(Codon optimization)

Public

BBa_K2074030
BBa_K2074030 Version 1 (Component)
Cry10Aa(Codon optimization)+Extended FMDV 2A+Cyt2(Codon optimization)

Public

BBa_K2074025
BBa_K2074025 Version 1 (Component)
Cyt2(Codon optimization)-Extended FMDV

Public

BBa_K2074022
BBa_K2074022 Version 1 (Component)
Cry10Aa(Codon optimization)-Extended FMDV

Public

BBa_K2074023
BBa_K2074023 Version 1 (Component)
Cry11Aa(Codon optimization)-Extended FMDV

Public

BBa_K2074021
BBa_K2074021 Version 1 (Component)
Cry4Aa(Codon optimization) - Extended FMDV

Public

BBa_K2074011
BBa_K2074011 Version 1 (Component)
Cyt1(Codon optimization)

Public

BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

Public

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

Public

BBa_K2074012
BBa_K2074012 Version 1 (Component)
Cyt2(Codon optimization)

Public

met_codon
met_codon Version (Component)

Public

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

Public

BBa_K2074033
BBa_K2074033 Version 1 (Component)
pSB1C3-Cry11Aa(Codon optimization)+Extended FMDV 2A+Cyt1(Codon optimization)

Public

BBa_K2074014
BBa_K2074014 Version 1 (Component)
Extended FMDV 2A for Chlamydomonas reinhardtii

Public

BBa_K1462070
BBa_K1462070 Version 1 (Component)
cyc1

Public

BBa_K809601
BBa_K809601 Version 1 (Component)
GAL promoter (kozak) without start codon ATG

Public

BBa_K2074026
BBa_K2074026 Version 1 (Component)
EGFP(Codon optimization)

Public

BBa_K2074034
BBa_K2074034 Version 1 (Component)
Cry11Aa(Codon optimization)+2A+EGFP(Codon optimization)

Public

BBa_K2074013
BBa_K2074013 Version 1 (Component)
EGFP(Codon optimization)

Public

BBa_K2074008
BBa_K2074008 Version 1 (Component)
Cry4Aa(Codon optimization)

Public

BBa_K2074010
BBa_K2074010 Version 1 (Component)
Cry11Aa(Codon optimization)

Public

BBa_K2074009
BBa_K2074009 Version 1 (Component)
Cry10Aa(Codon optimization)

Public

BBa_K234092
BBa_K234092 Version 1 (Component)
Stop codon + CYC1 Terminator

Public

BBa_M36117
BBa_M36117 Version 1 (Component)
Stop Codon

Public

BBa_K1051004
BBa_K1051004 Version 1 (Component)
Stop codon free mOrange in RFC[23] standard

Public

met_codon_seq
met_codon_seq Version (Sequence)

Public

BBa_K2110000
BBa_K2110000 Version 1 (Component)
CYC1 Terminator

Public

BBa_K1051053
BBa_K1051053 Version 1 (Component)
K1051001 (non stop codon ECFP + K1051006 (Stop codon + TBY-1 terminator)

Public

BBa_K1789003
BBa_K1789003 Version 1 (Component)
GFP1(with termination codon)

Public

BBa_K1491017
BBa_K1491017 Version 1 (Component)
Codon Optimized Supernova

Public

BBa_K1491015
BBa_K1491015 Version 1 (Component)
Codon Optimized KillerRed

Public

BBa_K2110014
BBa_K2110014 Version 1 (Component)
MHETase enzyme after codon optimization for bacillus subtilis

Public

BBa_K2110013
BBa_K2110013 Version 1 (Component)
PETase enzyme after codon optimization for bacillus subtilis

Public

BBa_K1051009
BBa_K1051009 Version 1 (Component)
e.coli terminator ilvGEDA_T with stop codon

Public

BBa_K1051002
BBa_K1051002 Version 1 (Component)
Stop codon free EYFP in RFC[23] standard

Public

BBa_K1686046
BBa_K1686046 Version 1 (Component)
Curdlan synthase gene with codon optimisation for E. coli

Public

BBa_K2066518
BBa_K2066518 Version 1 (Component)
mCherry (with start codon)

Public

BBa_K906006
BBa_K906006 Version 1 (Component)
Extended psbA2 for Synechocystis

Public

BBa_K1686045
BBa_K1686045 Version 1 (Component)
crdA gene with codon optimisation for E. coli

Public

BBa_K1686047
BBa_K1686047 Version 1 (Component)
crdC gene with codon optimisation for E. coli

Public

BBa_K1051001
BBa_K1051001 Version 1 (Component)
Stop codon free ECFP in RFC[23] standard

Public

BBa_K2074016
BBa_K2074016 Version 1 (Component)
*FMDV 2A(Non-functional) forChlamydomonas reinhardtii

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