SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
mChBBa_J176005 Version 1 (Component)mCh
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
fshPCDBBa_J176002 Version 1 (Component)fshPCD
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
VP64BBa_J176013 Version 1 (Component)VP64
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
PLflexBBa_J176040 Version 1 (Component)PLflex
Prm +BBa_I12007 Version 1 (Component)Modified lambda Prm promoter (OR-3 obliterated)
RFC105 ABBa_K1362414 Version 1 (Component)N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A
Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K1462503BBa_K1462503 Version 1 (Component)SH3 domain + Linker
pREBBa_K116603 Version 1 (Component)pRE promoter from λ phage
BBa_K1371018BBa_K1371018 Version 1 (Component)Docking domain 2 pre
BBa_K165006BBa_K165006 Version 1 (Component)Zif268-HIV DNA-binding domain
BBa_K300002BBa_K300002 Version 1 (Component)Phasin (PhaP) - head domain
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
Fok_aBBa_K243000 Version 1 (Component)Protein domain (active) of the restriction endonuclease FokI
ProPro Version (Component) CreBBa_J61047 Version 1 (Component)Cre DNA recombinase
RFC105 CCBBa_K1362419 Version 1 (Component)C-terminal splicing overhang CAAC=1/3?+Asn RFC[105] standard overhang CC
Gal4DBBBa_J176020 Version 1 (Component)Gal4 DB
BBa_J70594BBa_J70594 Version 1 (Component)RFC12 TAATAA Tail Domain
preSCsiteBBa_J18919 Version 1 (Component)preScission protease cleavage site (E. coli-optimized)
BBa_K1371016BBa_K1371016 Version 1 (Component)Docking domain 1 pre
BBa_K1371026BBa_K1371026 Version 1 (Component)Docking domain 6 pre
BBa_K1371024BBa_K1371024 Version 1 (Component)Docking domain 5 pre
BBa_K1371022BBa_K1371022 Version 1 (Component)Docking domain 4 pre
BBa_K1371020BBa_K1371020 Version 1 (Component)Docking domain 3 pre
BBa_K1462502BBa_K1462502 Version 1 (Component)PDZ domain + Linker
BBa_K1371019BBa_K1371019 Version 1 (Component)Docking domain 2 suf
SPzim17BBa_K809201 Version 1 (Component)signal peptide of ZIM17
mCherryBBa_K165004 Version 1 (Component)mCherry, yeast optimized for fusion
NpuDnaE(N)BBa_K1362400 Version 1 (Component)NpuDnaE N-Intein cloning piece
BBa_K1423000BBa_K1423000 Version 1 (Component)BCLA N-terminal Domain
Sin3BBa_K165003 Version 1 (Component)Sin3 Repression Domain
BBa_K747095BBa_K747095 Version 1 (Component)TAL-Protein_TT6_Direpeat
AmCyanBBa_J176022 Version 1 (Component)AmCyan
RFC105 NCBBa_K1362417 Version 1 (Component)C-terminal GG-linker overhang GG<u>TGGT</u>=Gly+Gly RFC[105] overhang NC
BBa_K1638016BBa_K1638016 Version 1 (Component)8 aa linker without BamHI restriction site and TEV recognition site
BBa_K1462501BBa_K1462501 Version 1 (Component)GBD domian + Linker
mCitrineBBa_J18931 Version 1 (Component)mCitrine
NpuDnaE(C)BBa_K1362401 Version 1 (Component)NpuDnaE C-Intein cloning piece